PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 386aa    MW: 43132 Da    PI: 7.6597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20233283255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ +++g
  Achn141871 233 HYRGVRRRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFEMRG 283
                 69*******.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-29232291No hitNo description
SuperFamilySSF541711.7E-21233292IPR016177DNA-binding domain
SMARTSM003802.0E-34233297IPR001471AP2/ERF domain
PROSITE profilePS5103223.591233291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-31233292IPR001471AP2/ERF domain
PfamPF008471.8E-14233283IPR001471AP2/ERF domain
PRINTSPR003673.1E-10234245IPR001471AP2/ERF domain
PRINTSPR003673.1E-10257273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNLHSYLFYS YIDLIKQIRT KANAGKNCLI SSTGLAGLDI FNSTIESLKP LHPIVHTRRI  60
GGRALEILMS SRKYNNNIIE QKAKHEVSAL ELIKLHLLGE FSPVGKFGAE LSEVSNSRSD  120
SLSSQTSSCD SQITISDYVN ANEVNDTDLF DFVPNSVDFF EFESKPQIID LATPKPVDLS  180
PKSSSQSRLV ERRLKIDLPP VKPPVTKLEW LEFSEPAAEV SEQKPSEAEE RQHYRGVRRR  240
PWGKYAAEIR DPKRRGSRVW LGTFDTAIEA AKAYDRAAFE MRGSKAILNL PLEAGKWHNT  300
AAVTSVDSSR KRTREVEEMV EEKPVKKEKV PESDASVLTQ LTSCPLTPSS WTTIWDQNAS  360
GIFNVPMLSP LSPHPMMGFT QLVVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28232292161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-28232292464ATERF1
3gcc_A4e-28232292464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698640.0GQ869864.1 Actinidia deliciosa ethylene response factor 13 (ERF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112382.11e-116ethylene-responsive transcription factor 5-like
TrEMBLA0A2R6PIY50.0A0A2R6PIY5_ACTCH; Ethylene-responsive transcription factor
STRINGXP_010275423.13e-90(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-47ethylene responsive element binding factor 5