PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 600aa    MW: 66622.1 Da    PI: 7.8744
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Achn141581  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-11446No hitNo description
CDDcd002024.88E-17654No hitNo description
PfamPF003208.0E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139195.3E-7338424IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGKHGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDEFEDQ  60
RVSRVKSISI KNKEAKVLKR KQNQDNGLVR GVDPDYSQCF RKALDEDTSN RSSSGSAISN  120
SESCVQFGSA SADASDLTDF ASTIVIVRGV YNLIVYFQVP ICIRQSCYYM FALELLIHFN  180
DSSRCFRLMI LSGPAQSVVW ETMVPSRKRT CVGRPKPSPV EKLTKDLHTI LHEQQSSQFS  240
GSSEEDLLFE SDRPMVSVEI GHGSVLIRHP SSIAREEESE ASSLSVDNKL HHANEAYSCL  300
STLPVHSSKK GANFPTLGID KSQKPIGQGM QQEQIKRDKA QHENLQILEN HNSTLRYVDL  360
KDVLDFDQFA RNLTKEEQQQ LLKYLPYSDT AALPDSLKSM FASPQFKENI SSFQKLHAEG  420
VFDLSLSGVK ADDCRTLKRL TLGNLTKSKW VEQYNLLKDV KYKSSNGGFV VPGGPNAIAS  480
GNSTNVKRLR DGQYQNFPGA KTTMKSPKRA MKGIYEHKEL IDNDGSYFSP RSLFALPTDN  540
SSLMMDSFQF MGESSDQDLL LDVPYNSSFP EAELLLPTSS SSAQASAGSS SIYPYLARP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125296.10.0GATA transcription factor 26-like
TrEMBLA0A2R6PIH20.0A0A2R6PIH2_ACTCH; GATA transcription factor (Fragment)
STRINGcassava4.1_005076m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-117GATA transcription factor 26