PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 270aa    MW: 30463.5 Da    PI: 8.3274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-072468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE + + +a + +  +   +W ++a++++ g++  +++  + 
       Achn141271 24 KWTKEENKEFERALAIYDEEtpdRWLKVAAMIP-GKSISDVVRQYM 68
                     7*****************99*************.****99998886 PP
2Myb_DNA-binding408.8e-13124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W+ I+r +   +t  q+ s+ qky
       Achn141271 124 PWTEDEHRRFLMGLEKHGKGDWRNISRNFVISKTSTQVASHAQKY 168
                      8*****************************778***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0051771IPR017877Myb-like domain
SMARTSM007178.6E-82173IPR001005SANT/Myb domain
CDDcd001671.40E-72470No hitNo description
PfamPF002496.3E-62468IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-102476IPR009057Homeodomain-like
PROSITE profilePS5129417.734117173IPR017930Myb domain
SuperFamilySSF466893.07E-16118173IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-18120172IPR006447Myb domain, plants
SMARTSM007176.4E-11121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10121167IPR009057Homeodomain-like
PfamPF002497.0E-11124168IPR001005SANT/Myb domain
CDDcd001672.90E-9124169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
METLCPSSCF QNFSFSVQQT KYAKWTKEEN KEFERALAIY DEETPDRWLK VAAMIPGKSI  60
SDVVRQYMEL EADVCDIEAG LVPIPGYLTS SFTLEMVNNC GFDGLRKRPL TGRSGDQERK  120
KGVPWTEDEH RRFLMGLEKH GKGDWRNISR NFVISKTSTQ VASHAQKYFI RQNSGGKDKR  180
RPSIHDITTV HLVDPTPSSN GDSPSHKSLI TPTMVLNWTQ PNDDGAVMVF GSTHVNPFMQ  240
YKYDIASHGL KLQRSAHLGT LNSLFQSIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1525901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072700.11e-135transcription factor DIVARICATA-like
SwissprotQ8S9H73e-87DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2R6PLH90.0A0A2R6PLH9_ACTCH; Transcription factor DIVARICATA like
STRINGEMJ204611e-115(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]