PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn141091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 326aa    MW: 35229.1 Da    PI: 4.7829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn141091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-156199747
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
       Achn141091 61 EEDHIILAAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 99
                     9***************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.36935104IPR017930Myb domain
SMARTSM007171.2E-839102IPR001005SANT/Myb domain
CDDcd001676.14E-1142100No hitNo description
SuperFamilySSF466891.2E-1260103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1860101IPR009057Homeodomain-like
PfamPF002492.3E-136199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKEEDLMTDP PFAAADGGDD DGYGDGDGNG GGGFSGSRVK GPWSPEEDAV LSRLPLFAAD  60
EEDHIILAAH AIHGNKWASI AKLLPGRTDN AIKNHWNSTL RRKGMDLKRF KPSPFNTLEE  120
GSLNMTKASL EETLSCGDIN SSKAPMTEEK SLKEKRHNHC EDRPQINEDH QVAEINHPTL  180
SRPVARVGAF SVYNPLSSST SGFPSVRGEP VVPLRCGHGC CEASRGVPSR RSLLGPEFVE  240
YDGPPPFSSH ELAAIATDLS NIAWIRSGLE SSTQVSESTA SQTQGAAEPM DIFEKQNLNN  300
DNFRFELSQM PMPTFALPAE LEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A3e-1760103851MYB PROTO-ONCOGENE PROTEIN
1mbk_A3e-1760103851MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-176010361104C-Myb DNA-Binding Domain
1msf_C8e-176010361104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078108.11e-120transcription factor MYB25-like
SwissprotQ425752e-45MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2R6PLF40.0A0A2R6PLF4_ACTCH; Transcription factor like
STRINGEOY179372e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.17e-53myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]