PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn141091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 326aa MW: 35229.1 Da PI: 4.7829 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 61 | 99 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ Achn141091 61 EEDHIILAAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 99 9***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.369 | 35 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-8 | 39 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-11 | 42 | 100 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-12 | 60 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 60 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-13 | 61 | 99 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MKEEDLMTDP PFAAADGGDD DGYGDGDGNG GGGFSGSRVK GPWSPEEDAV LSRLPLFAAD 60 EEDHIILAAH AIHGNKWASI AKLLPGRTDN AIKNHWNSTL RRKGMDLKRF KPSPFNTLEE 120 GSLNMTKASL EETLSCGDIN SSKAPMTEEK SLKEKRHNHC EDRPQINEDH QVAEINHPTL 180 SRPVARVGAF SVYNPLSSST SGFPSVRGEP VVPLRCGHGC CEASRGVPSR RSLLGPEFVE 240 YDGPPPFSSH ELAAIATDLS NIAWIRSGLE SSTQVSESTA SQTQGAAEPM DIFEKQNLNN 300 DNFRFELSQM PMPTFALPAE LEGLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mbj_A | 3e-17 | 60 | 103 | 8 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 3e-17 | 60 | 103 | 8 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-17 | 60 | 103 | 61 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-17 | 60 | 103 | 61 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028078108.1 | 1e-120 | transcription factor MYB25-like | ||||
Swissprot | Q42575 | 2e-45 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A2R6PLF4 | 0.0 | A0A2R6PLF4_ACTCH; Transcription factor like | ||||
STRING | EOY17937 | 2e-93 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 7e-53 | myb domain protein 109 |
Publications ? help Back to Top | |||
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