PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn140591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 285aa    MW: 31656.8 Da    PI: 7.0343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn140591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-18156206255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp     + +r++lg++ taeeAa a+++ + +++g
  Achn140591 156 HYRGVRRRP-WGKYAAEIRDPAR---SgARVWLGTYETAEEAAVAYDKTAFRMRG 206
                 7********.**********843...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-31155215IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22156216IPR016177DNA-binding domain
PROSITE profilePS5103224.118156214IPR001471AP2/ERF domain
SMARTSM003804.4E-33156220IPR001471AP2/ERF domain
CDDcd000181.16E-29156215No hitNo description
PfamPF008473.6E-12156206IPR001471AP2/ERF domain
PRINTSPR003671.1E-10157168IPR001471AP2/ERF domain
PRINTSPR003671.1E-10180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYGQESTAVI FPGNIPANIC RNSSFGNLMP CLSETWGDLP LNYDDSEDMV IYGLLNDSVH  60
VGWTSSNLTV TDFAPEPRHE TEPSTTTVHS RFYSPLTFTD SEDGLLRETF RVGLTPCDLT  120
VTDVKVEPMN EIEPATTTSQ LVAPPVMVVA PPKGRHYRGV RRRPWGKYAA EIRDPARSGA  180
RVWLGTYETA EEAAVAYDKT AFRMRGSKAL LNFPHRIGWN EPEPVRVTPK RRSAEPASES  240
VAPKRRRKGT AAERSEPEME RQSNVLPVGC KMKPLPVGEQ LLVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33153217266ATERF1
3gcc_A3e-33153217266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229247KRRSAEPASESVAPKRRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098589.11e-100ethylene-responsive transcription factor 2-like
SwissprotQ404794e-96ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A2R6RQY60.0A0A2R6RQY6_ACTCH; Ethylene-responsive transcription factor 2 like
STRINGXP_009606945.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-51ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]