PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn139181

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 403aa MW: 45093.9 Da PI: 7.7482

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn139181	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9.2e-33	257	312	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i++lm+v+gLt+++vkSHLQkYRl+ Achn139181 257 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRDLMQVDGLTNDEVKSHLQKYRLH 312 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.856	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	1.66E-17	255	315	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-29	255	315	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-27	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	259	310	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MGSIPRELSL DVRPTFIPKT ISEFLGELTE IGSATEKLTR LDDFVKRLED EMRKIDAFKR 60 ELPLCMILLN DAIVTLKEES TERRARNVEP VLEEFIPLKK SCDEDEKDEV KKEKDGDKMN 120 WMSSVQLWNY NDCKNIGSKY DQKQNSIPQF IQGVGEECPL VSDDPFECNK NKTGSKTFVP 180 FKVCSIFPAT RTRKEDKMEI PKLSLLTPRT KNLREEVGSN GLSSKISGSR ADSSTTTTSN 240 LNLRARPQTP QQQNTRKQRR CWSPELHRRF VNALQQLGGS QVATPKQIRD LMQVDGLTND 300 EVKSHLQKYR LHTRRLPNAT GTPANQPVVL LGVLWMPQDQ NGESSKQSSS KSGSPQGPLQ 360 LAGTGGGTST TGGESMEDED DEEKSESYSW KSHIPMSGKV GA*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MGSIPRELSL DVRPTFIPKT ISEFLGELTE IGSATEKLTR LDDFVKRLED EMRKIDAFKR  60
ELPLCMILLN DAIVTLKEES TERRARNVEP VLEEFIPLKK SCDEDEKDEV KKEKDGDKMN  120
WMSSVQLWNY NDCKNIGSKY DQKQNSIPQF IQGVGEECPL VSDDPFECNK NKTGSKTFVP  180
FKVCSIFPAT RTRKEDKMEI PKLSLLTPRT KNLREEVGSN GLSSKISGSR ADSSTTTTSN  240
LNLRARPQTP QQQNTRKQRR CWSPELHRRF VNALQQLGGS QVATPKQIRD LMQVDGLTND  300
EVKSHLQKYR LHTRRLPNAT GTPANQPVVL LGVLWMPQDQ NGESSKQSSS KSGSPQGPLQ  360
LAGTGGGTST TGGESMEDED DEEKSESYSW KSHIPMSGKV GA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028102050.1	1e-170	myb family transcription factor EFM-like
TrEMBL	A0A2R6Q5N7	0.0	A0A2R6Q5N7_ACTCH; Myb family transcription factor EFM like
STRING	VIT_03s0063g01060.t01	1e-166	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	5e-59	G2-like family protein