PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn138051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SBP | ||||||||
Protein Properties | Length: 448aa MW: 49007.5 Da PI: 8.2353 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 98.9 | 4.5e-31 | 92 | 160 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+v+g+eqr fh l efD++krsCr+rLa+hn+rrrk++ Achn138051 92 CQVYGCKKDLSSCKDYHKRHKVCEVHSKTAKVVVNGIEQR-------FHLLGEFDDGKRSCRKRLAGHNARRRKPH 160 **************************************97.......7**************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-24 | 86 | 146 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 25.017 | 89 | 159 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-30 | 90 | 162 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-20 | 92 | 158 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MMGKSWPGKN LVKDCFSSKV SEKISIPMAS TTNAFSAEED FSSSVVESNC RDSSLVDLNL 60 GRIADHRDGQ DLSSSAPVKR VRGDLSSKTP FCQVYGCKKD LSSCKDYHKR HKVCEVHSKT 120 AKVVVNGIEQ RFHLLGEFDD GKRSCRKRLA GHNARRRKPH VGIHSGRIGR LLQSYNGSRF 180 GGNTLTASSF LCQDILPSTL LPPQTHYTNG WSGCIKLENG VDYRSQSAIP IAHGDPHPKS 240 LFHHDFGKHC PPFHTNGVNS ATGRDFNVIS EYPHDMDTRD SLSRSLVQTI GSEDFNLFDS 300 ASTVQGQSGM STPGCALSLL SSQSQNSSSH SSGIPMAQPL YVSGSHPRDS VSQVSGKLLG 360 ASQSHKFNSS RINFVEENQF GSILISDDGE AVNFTDGIFR GSQYMDARDS LSSEDGPTID 420 LLQLSSQLQR VEHQRQSMQA KQKNDSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-20 | 86 | 158 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092789.1 | 1e-168 | teosinte glume architecture 1-like isoform X2 | ||||
TrEMBL | A0A2R6PRP2 | 0.0 | A0A2R6PRP2_ACTCH; Squamosa promoter-binding-like protein | ||||
STRING | EOY22129 | 1e-158 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-39 | SBP family protein |