PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn137981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TCP | ||||||||
Protein Properties | Length: 423aa MW: 46853.1 Da PI: 8.7663 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.7 | 1.9e-29 | 104 | 187 | 2 | 85 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k+ i+ l+ ++ ++ ++++ +++s + + Achn137981 104 FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHDIDNLPPLQMPPGNFSQFHQRSLVSPEL 187 689*************************************************************99999888555444444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.355 | 106 | 164 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.6E-27 | 106 | 221 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MLGVQLASCK ILLPICGPVS AKWLLLKILL IDVGPSSMRV ADEALIAQLN DEERKMIQNS 60 REKDFEAKAE GDANNISKFN KAPSSSRQWS AFKNPRIVRV SRAFGGKDRH SKVCTVRGLR 120 DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLDATKHD IDNLPPLQMP PGNFSQFHQR 180 SLVSPELNAP QSSLATFFSP IPEFVKEGGV TQSLLPNKEG IKINYNLEDE QFMGKSNAGM 240 EGKLKEVERE STIVEKTKWM RTNEDQSYIP QVSAQNFFPL SSNLSSFPYN YYHFDPSSLS 300 LSQFGPHGLF PPPQTEASNP SNFMSMLSSL ALPSGSQLLL SPPVATPSIF PSFPPYIPNP 360 GESDTRQINH FPFLSSSSHH GLQNPLMPSL HNSFSSPMSA SSKVHLHSHN DERQLNKGNT 420 GS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 111 | 165 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 111 | 165 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059156.1 | 1e-157 | transcription factor TCP5-like isoform X2 | ||||
TrEMBL | A0A2R6PRZ3 | 0.0 | A0A2R6PRZ3_ACTCH; Transcription factor like | ||||
STRING | EOY22094 | 1e-105 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |