PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn137771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 234aa    MW: 25617.6 Da    PI: 6.8041
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn137771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer67.22.9e-212373257
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 +++rY+ C kNh a++G ha+DGC Efm+s     ++a lkC  CgCHRnFH ++ 
   Achn137771 23 TNIRYEGCCKNHGARMGKHATDGCLEFMAS-----DIADLKCDVCGCHRNFHTKKL 73
                 579**************************9.....7899*************9986 PP
2ZF-HD_dimer59.29e-1984135257
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  ++v+Y+ C kNh a++G + ++DGC Efm+s     +++ lkC  CgCHRnFH ++ 
   Achn137771  84 SEVKYEGCCKNHGARMGEYsSTDGCLEFMAS-----DIEDLKCDVCGCHRNFHTKKL 135
                  689**************98358********9.....6789*************9986 PP
3ZF-HD_dimer80.22.5e-25146205260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++v+Y +C kNhAa++G + ++DGC Efm+sege g+ + l CaACgCHRnFHR+ +e+e
   Achn137771 146 SEVKYGDCCKNHAARMGEYsSTDGCLEFMASEGEAGSRDMLMCAACGCHRNFHRKIEEKE 205
                  689**************98358*********************************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-92173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.3E-182572IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-172672IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.8782772IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-884135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-1686134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-1487134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.62588134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-12148200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-22148201IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.7E-20149200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.929150201IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSNIKEEDVN KDRSNAASTV KTTNIRYEGC CKNHGARMGK HATDGCLEFM ASDIADLKCD  60
VCGCHRNFHT KKLVRADGPS RVNSEVKYEG CCKNHGARMG EYSSTDGCLE FMASDIEDLK  120
CDVCGCHRNF HTKKLARADG PSRVNSEVKY GDCCKNHAAR MGEYSSTDGC LEFMASEGEA  180
GSRDMLMCAA CGCHRNFHRK IEEKEEVVRK RPAVSPPSYG SGAAYDSGDD YSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117444.16e-41zinc-finger homeodomain protein 3-like isoform X1
TrEMBLA0A2R6PUE41e-73A0A2R6PUE4_ACTCH; Zinc-finger homeodomain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.12e-17mini zinc finger 2