PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn136171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26325.8 Da PI: 7.3815 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+ +l+g Achn136171 94 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAARAYDVAAYCLKG 144 68*****887.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-12 | 94 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 95 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-21 | 95 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-29 | 96 | 153 | No hit | No description |
PRINTS | PR00367 | 3.6E-12 | 134 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDVSYKLDRH RHDMLQRRYG ADTVMGQQVQ GRAIQSFHCP CPTCTETRVV FKEHMMKLVS 60 FVMEEPPPPC TEDDPATSTD NRRKSAAVAG TRHPVYRGVR KRRWGKWVSE IREPRKKSRI 120 WLGSFPAPEM AARAYDVAAY CLKGCKAQLN FPEEVELLPK PSTCAARDIQ TAAAMAAKAV 180 VAEKKGSASE SDGGHDDFWG EIELPELNAV SDYLSEVWCW SSCGVTVAGD ATWNDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 90 | 157 | 9 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 102 | RRKSAAVAGTRHPVYRGVRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835591.1 | 3e-71 | PREDICTED: ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 2e-53 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A2R6Q7P2 | 1e-131 | A0A2R6Q7P2_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | Migut.N01538.1.p | 1e-70 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-53 | ERF family protein |
Publications ? help Back to Top | |||
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