PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn135131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SRS
Protein Properties Length: 318aa    MW: 34599.4 Da    PI: 7.5442
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn135131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702206.85.7e-641112513154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaeskkel 100
                  g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqq+ +             ++kr re+ +  ++s+l +t+l+   s   l
  Achn135131 111 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQQRVERE-----------NPKRMRESnTPIASSSLVCTRLPAIAS--GL 196
                 5789**********************************************9887654...........333333331456788999999999865..58 PP

      DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                 e  ++P+ev+s+avfrcvrvs++++ g++e+aYqtav+igGh+fkGiLydqG+e+
  Achn135131 197 ELGNFPAEVNSAAVFRCVRVSAMNNgGDDEYAYQTAVNIGGHLFKGILYDQGAES 251
                 8899*********************899************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.7E-56113250IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.2E-27115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.3E-27201248IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAGFFSLGGG RETNTNDQDH QQQTQNPNNP VAEISPENWF LYRNEDISYK GFELWQHQQQ  60
PQHQQQQPQH VMQHRHQLHN LYSSAGGLTV GPSSLVDEPT RSGFVMMRSG GGGISCQDCG  120
NQAKKDCTHM RCRTCCKSRG FQCHTHVKST WVPAAKRRER QQRVERENPK RMRESNTPIA  180
SSSLVCTRLP AIASGLELGN FPAEVNSAAV FRCVRVSAMN NGGDDEYAYQ TAVNIGGHLF  240
KGILYDQGAE SQYMAGESSS GTASGLNLIG TAAATDSSAV TATAADSPAA AFLDPSLFPA  300
PLNTFMSGTQ FFPHPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969933.11e-122PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotK4B6C92e-98EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A2R6S2L90.0A0A2R6S2L9_ACTCH; Protein SHI RELATED SEQUENCE like
STRINGEOX909421e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.17e-70Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]