PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn134731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 962aa    MW: 108867 Da    PI: 7.8188
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn134731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.61.1e-1345379561374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+ v++g+ e+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  ++see+ a++lf++++P+l++s++++N
  Achn134731 537 LIQLLVACANQVAAGNVENANVVLEQISHLASPDGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTKIS--SVSEEILAQRLFFDLCPFLRLSYVITN 633
                 689*************************************************************999998..6************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI ea+ege++vHiiD+   +++QW+ LlqaL++Rpegpp+lRiTg+++    +ke le +++rL + A +l++pf+fn+ ++++le+l++e L+vk+
  Achn134731 634 LAIIEAMEGEKMVHIIDLHSFEPAQWIDLLQALSARPEGPPHLRITGIHE----QKEVLELMARRLIEEAGKLDIPFQFNP-IVSKLENLDIECLHVKN 727
                 **************************************************....9**************************.7999************* PP

        GRAS 199 gEalaVnlvlqlhrll..........................................................desvsleserdevLklvkslsPkvv 239
                 gEala+++vlqlh++l                                                          ++s ++ +    +L+++++lsPk++
  Achn134731 728 GEALAISSVLQLHSVLalddeiprrqspsvskslnsvpiqrvfqmnsltlgdflekdvvngyspsidslspvsfASSPKMGN----FLNALRGLSPKLM 822
                 ********************************************************************88655555555555....************* PP

        GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                 vv+eqe++hn++s+ +r++eal++y++lfd+le+++pr s er kvE++l+g+ei+n++aceg er+erhe+lekW  rle aGF+ vpls++   qa 
  Achn134731 823 VVTEQESNHNAHSLIDRVTEALNFYATLFDCLESTVPR-SIEREKVEKMLFGEEIKNIIACEGLERKERHERLEKWIPRLELAGFGRVPLSYHGILQAT 920
                 ***********************************966.789********************************************************* PP

        GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +ll+ ++ dgyr++ee+g+lv+ W++ pL+s+SaWr
  Achn134731 921 RLLQSYGYDGYRIKEEKGCLVIFWQTTPLFSISAWR 956
                 ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM008917.1E-7263365IPR006166ERCC4 domain
Gene3DG3DSA:3.40.50.101301.0E-16282436IPR020819DNA repair nuclease, XPF-type/Helicase
PfamPF027321.5E-13283420IPR006166ERCC4 domain
SuperFamilySSF529802.57E-19286430IPR011335Restriction endonuclease type II-like
PROSITE profilePS5098558.005511936IPR005202Transcription factor GRAS
PfamPF035143.8E-132537956IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006259Biological ProcessDNA metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MEEQMRVVCP DNKDLAEFMW KKRQEIAERP KGLSENIEIT LHKAYSNVCN SKTPIRTLKE  60
FSQIKGVGKW ILRLMQEFFK TDSGASDHED LTKKGKSKGT RRYVPQKNSV AYALLITLYR  120
PEKGKGKPGQ FGSSPKDWYS GFSSMKTLIT NGLVVKSSCP AKYMLSEEGR EAARDCLLRS  180
GLVDSTENLV TTERLPNLDA SNISDLEFVR ADSTKEAAIV NSSLQKKTID VPPESLDRAY  240
RFHSKSGCRQ IVSQCLYGCR HLRLSLSDDT QTTMQQANRS RSRKIIENIR TQFKIQIEVR  300
RLPVGDGIWI ARDKQLGNEY VLDFIVERKN VDDLRCSIRD NRYKDQKLRL LFMADILIYC  360
LDHFSVVIAL FKRCGVKKLI YVVEGDPNSS EAAESIKTAC FTTEILEGFD VQRTSGLGDT  420
LRKYGYLTQA ITQYYRSQSF EDIQNNLGVC PPFGDFIRRC QNLDKMTVSD VFAIQLMQVP  480
QVTEEIAIAV LDLYPTLLSL ARAYSLLLFS LMSLSPGLGS PYPWLRELKS EERGLCLIQL  540
LVACANQVAA GNVENANVVL EQISHLASPD GDTMQRIAAY FTEALADRML KGWPGLHKAL  600
NSTKISSVSE EILAQRLFFD LCPFLRLSYV ITNLAIIEAM EGEKMVHIID LHSFEPAQWI  660
DLLQALSARP EGPPHLRITG IHEQKEVLEL MARRLIEEAG KLDIPFQFNP IVSKLENLDI  720
ECLHVKNGEA LAISSVLQLH SVLALDDEIP RRQSPSVSKS LNSVPIQRVF QMNSLTLGDF  780
LEKDVVNGYS PSIDSLSPVS FASSPKMGNF LNALRGLSPK LMVVTEQESN HNAHSLIDRV  840
TEALNFYATL FDCLESTVPR SIEREKVEKM LFGEEIKNII ACEGLERKER HERLEKWIPR  900
LELAGFGRVP LSYHGILQAT RLLQSYGYDG YRIKEEKGCL VIFWQTTPLF SISAWRFRRY  960
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-405259587381Protein SCARECROW
5b3h_A4e-405209581380Protein SCARECROW
5b3h_D4e-405209581380Protein SCARECROW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-175scarecrow-like 3