PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn134421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 165aa    MW: 18456 Da    PI: 8.4637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn134421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17755254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+ a+a+++a++ + 
  Achn134421  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDGARAYDEAARLMC 55
                69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.81E-32666No hitNo description
Gene3DG3DSA:3.30.730.102.5E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103220.481764IPR001471AP2/ERF domain
PfamPF008472.1E-9756IPR001471AP2/ERF domain
SMARTSM003803.1E-38770IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-20766IPR016177DNA-binding domain
PRINTSPR003671.3E-10819IPR001471AP2/ERF domain
PRINTSPR003671.3E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDGARAYDEA ARLMCGPRAR  60
TNFPYNPNAP PSTAAKLLSA NLTAKLHKCY MASLQISKQS AAETQRVMNS RGGEMGGGWF  120
PEKKAAAPPQ KLEALEEDYI EQMIEELLDY GSIELCSVVP SQDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17669468ATERF1
3gcc_A5e-17669468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129980.15e-83PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-76ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2R6QZE21e-119A0A2R6QZE2_ACTCH; Ethylene-responsive transcription factor
STRINGBra020490.1-P2e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-78ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]