PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn134411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 18374.9 Da PI: 8.831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 7 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p r++lg+f tae+ a+a+++a++ + Achn134411 7 RYRGVRQRH-WGSWVSEIRHP-----LlkIRIWLGTFETAEDGARAYDEAARLMC 55 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-31 | 6 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-8 | 7 | 56 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.35 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 7 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.5E-38 | 7 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKI RIWLGTFETA EDGARAYDEA ARLMCGPRAR 60 TNFPYNPNAP PSAAAKLLSA NLTAKLHKCY MASLQISKQS AVETQRVMNS RGGEIGGGWS 120 PEKKAVAAPQ KLEALEDDHI EQMIEELLDY GSIELCSVVP SQDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-17 | 6 | 69 | 4 | 68 | ATERF1 |
3gcc_A | 7e-17 | 6 | 69 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129980.1 | 1e-82 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 1e-75 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2R6QZC2 | 1e-119 | A0A2R6QZC2_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | Bra020490.1-P | 6e-82 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-63 | ERF family protein |
Publications ? help Back to Top | |||
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