PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn133311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 455aa    MW: 49240.7 Da    PI: 5.5491
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn133311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.51e-116904513374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAe+v+ ++l +a+ lL ++sel+sp g++ +R+aayf++AL+ar+ +s+ ++y+ l+ ++ + +++ +  +al+ ++ +sP++kfsh+taNqa
  Achn133311  90 GLLLQCAECVAMDKLDEATDLLPEISELSSPFGSSAERVAAYFANALQARIISSCLGTYSPLNLKTLNLTHTHKICNALQSYNSISPLIKFSHFTANQA 188
                 58************************************************************************************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I +a++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTgvgs    s++ le+tg+rL +fA++lg+pfef++l +k  +  ++++L v+pgE
  Achn133311 189 IFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIRSVRITGVGS----SADVLEATGRRLGDFASSLGLPFEFHPLEVKIGNITDPSQLGVRPGE 283
                 ************************************************....9**************************999999999*********** PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 +++V++++  h l+d ++s       +L+l+  l+Pk++++veq++++  ++sFl rf+eal+yysalfd+l  +l  +s er+ vE++l+g ei+n+v
  Achn133311 284 STVVHWMH--HCLYDVTGSDLG----TLRLLTLLRPKLITMVEQDLSLsHGGSFLGRFVEALHYYSALFDALGDGLCGDSIERHQVEHQLFGCEIRNIV 376
                 *******9..888888888888....*********************98899*********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r+ + + +e+W + l+++GFk+v+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Achn133311 377 AVGGPKRTGEVK-VERWGDELGRVGFKTVSLAGNPAAQASLLLGMFPWNGYTLVEENGCLKLGWKDLSLLTASAWQ 451
                 ******998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.5762431IPR005202Transcription factor GRAS
PfamPF035143.5E-11490451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLHSLVPQSP INSNPNQNPN PSTSNSAMRA KRTIDLDEST GDHDDNDSSR KRMNLSGEAS  60
ISGEKTAAAA AAENEEALIE GESSGLRLLG LLLQCAECVA MDKLDEATDL LPEISELSSP  120
FGSSAERVAA YFANALQARI ISSCLGTYSP LNLKTLNLTH THKICNALQS YNSISPLIKF  180
SHFTANQAIF QALDGEDRVH VIDLDIMQGL QWPGLFHILA SRPRKIRSVR ITGVGSSADV  240
LEATGRRLGD FASSLGLPFE FHPLEVKIGN ITDPSQLGVR PGESTVVHWM HHCLYDVTGS  300
DLGTLRLLTL LRPKLITMVE QDLSLSHGGS FLGRFVEALH YYSALFDALG DGLCGDSIER  360
HQVEHQLFGC EIRNIVAVGG PKRTGEVKVE RWGDELGRVG FKTVSLAGNP AAQASLLLGM  420
FPWNGYTLVE ENGCLKLGWK DLSLLTASAW QPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1639445225380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759889.10.0LOW QUALITY PROTEIN: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2R6QCE60.0A0A2R6QCE6_ACTCH; Scarecrow-like protein
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-175GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]