PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn133111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HB-other
Protein Properties Length: 355aa    MW: 39379.1 Da    PI: 8.1339
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn133111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.14.6e-0610532255
                SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
    Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                ++ p ++  e LA+k            ++ +qV +WFqNrR+  
  Achn133111 10 TQVPARDVLEALAEKFsaseersgtiVVQMKQVWNWFQNRRYAL 53
                667778888888888888888888878999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.021156IPR001356Homeobox domain
CDDcd000860.00568854No hitNo description
SuperFamilySSF466897.7E-8955IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-51060IPR009057Homeodomain-like
PfamPF167195.1E-41105232IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDTILQEHNT QVPARDVLEA LAEKFSASEE RSGTIVVQMK QVWNWFQNRR YALRAKAAKA  60
PGKLNVSPMP RDDSTAVRNV PQAPQSVTIP SAVQSVGRTV SDNSQMEFEA KSARDGAWYD  120
VALFLSHRSL DTGDPEALVR FTGFGSEEDE WVNIRKHVRQ RSLPCESSEC VAVLPRDLVL  180
CFQEVKEQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD QSEEIVPLRK VCRRPETDYR  240
LQQLHTVNES GSVNLQKTGA EPQKSNTLRV YPPTKTTQKQ QKVDERNDGA AMVPPVSLGN  300
VSVASDTKVP QPKISEISTA SNVKTSIVPP PNVAVTSGAT TNTTSGSDQN TPQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-451032361134SHH1 SAWADEE
4iur_B2e-451032361134SHH1 SAWADEE
4iut_A2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-451032361134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077268.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
RefseqXP_028077269.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-128SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2R6QCJ40.0A0A2R6QCJ4_ACTCH; Protein SAWADEE HOMEODOMAIN like
STRINGXP_008226439.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-105sequence-specific DNA binding transcription factors;sequence-specific DNA binding