PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn132541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 462aa    MW: 50517.9 Da    PI: 7.495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn132541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-17310359155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++aa+++l+g
  Achn132541 310 PVYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDAAALALKG 359
                 68****6..678*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030622.5E-61995IPR004299Membrane bound O-acyl transferase, MBOAT
SuperFamilySSF542363.37E-8128190IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.1E-7139187No hitNo description
SuperFamilySSF634913.92E-8169272IPR003103BAG domain
PfamPF021793.3E-6210272IPR003103BAG domain
PfamPF008473.5E-10310359IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18311368IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-27311368IPR001471AP2/ERF domain
SMARTSM003803.7E-28311373IPR001471AP2/ERF domain
PROSITE profilePS5103220.679311367IPR001471AP2/ERF domain
CDDcd000182.52E-15312367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEPMATAIPP LFRGHPAGAL MVLLLKVISC AMNYDDGLLK EEDLREAQKR NRLLKLPSFI  60
EYVGHCLCCG SHFAGPVYEI KDFSSGRRGK GGWKDSSPPK PRWDGAKNVD ILGVEFAKTA  120
AQIPLVWNIQ VSTWLRYWEL KKTLAGPTGL HPQDQKLVYK DKERNSKSFL DVAGVKDGSE  180
MVVFEDLMSP RVFESRKIEK ILDNKASKAI AEISLQIDKL SKQLATLEIE IYSGRKAEEA  240
VLSSLIELFM TQLLKLDEIV AEGDVKLQRR EQRTIAPTET QSGKPIYKRE KAMCRGSGSG  300
AGRPATGKHP VYRGIRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAAAAY DAAALALKGR  360
DAVLNFPGSA DSYPVPASSS PADVRAAAAS AAAMMGEGGS ATVEEGPVGG HDFVDEEALF  420
DLPNLLVDMA GGMLMSPPRI ESPPSDDSPG NYDGDRLWSY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hwi_B3e-4112927216159BAG family molecular chaperone regulator 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-40ERF family protein