PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn132531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 621aa    MW: 68996.1 Da    PI: 5.3371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn132531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.76.6e-1262386041373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++ L++c+ea+ s++ + +++++++l +lasp+g+p++Rl+ayf+eALa r+ + +++++++  p+e + +  ++  + l+l+++vsPi+kf h+t N
  Achn132531 238 LISILMACVEAIGSKNIAGINHFVSKLGDLASPRGSPITRLTAYFVEALALRVCKIWPQIFHISVPREFD-RVDDDGGTTLRLLNQVSPIPKFIHFTSN 335
                 5789*****************************************************************8.45667778889***************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 + +l+ +eg+ervH+iDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+ l etg+rL+ fAe+l++pfef++ v++rled++l++L+vk+
  Achn132531 336 EVLLRVFEGNERVHVIDFDIKQGLQWPSLFQSLASRANPPSHVRITGVGE----SKQDLIETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLWMLHVKE 429
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aVn+v++lh+ll +    +  ++++L l++s++P  v v eqea+hn   + +r++++l+yysa+fds+++ lp es  rik+E++ +grei+n+
  Achn132531 430 GETVAVNCVFHLHKLLYDGSGGA--IKDFLGLIRSTNPGAVLVGEQEAEHNYLILEARVSNSLKYYSAIFDSVDSVLPMESPVRIKIEEM-FGREIRNI 525
                 ****************6655444..489**************************************************************.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaW 373
                 +aceg++r+erhe+++kWr+ +e+ GFk   ++e++  q ++llr+++ + ++ve++    ++l+l W d+pL++vSaW
  Achn132531 526 IACEGSNRIERHERFAKWRKLMEQGGFKCTGIGERELIQSRMLLRMYNCESFSVEKQgrdGDALTLSWLDQPLFTVSAW 604
                 ************************************************999****6655477888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.015212582IPR005202Transcription factor GRAS
PfamPF035142.3E-123238604IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRMSTQ RLDLPCSFAR KDASRPQPIR PVGISVDKPS LESKTSTCSL  60
KQTSIKGEFW EKGKSLKRFA EQGCFGDDES FMIRAKRKRC NVKSDDSTKI GEDLSLGQLG  120
SGNFWFQPNF TIPQVPFSLS CSGDEERVCF VPSELISPPL PPRNTQITEL GDKEVETSDR  180
PVNTGSGSST SSESHHSLDL KLNENPLGQE IGNGSGLHNP IEEAEDEDSH DMDDDFELIS  240
ILMACVEAIG SKNIAGINHF VSKLGDLASP RGSPITRLTA YFVEALALRV CKIWPQIFHI  300
SVPREFDRVD DDGGTTLRLL NQVSPIPKFI HFTSNEVLLR VFEGNERVHV IDFDIKQGLQ  360
WPSLFQSLAS RANPPSHVRI TGVGESKQDL IETGDRLSGF AEALNLPFEF HPVVDRLEDV  420
RLWMLHVKEG ETVAVNCVFH LHKLLYDGSG GAIKDFLGLI RSTNPGAVLV GEQEAEHNYL  480
ILEARVSNSL KYYSAIFDSV DSVLPMESPV RIKIEEMFGR EIRNIIACEG SNRIERHERF  540
AKWRKLMEQG GFKCTGIGER ELIQSRMLLR MYNCESFSVE KQGRDGDALT LSWLDQPLFT  600
VSAWAPDDVG GCSFSCSQPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6524560625379Protein SCARECROW
5b3h_D4e-6524560625379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972132.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2R6PI250.0A0A2R6PI25_ACTCH; Scarecrow-like protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein