PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn131671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 139aa    MW: 15519.3 Da    PI: 9.5959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn131671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-171565155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a   l+g
  Achn131671 15 SPYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFHLRG 65
                68******99.**********9...336**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-201574IPR016177DNA-binding domain
PROSITE profilePS5103222.1021673IPR001471AP2/ERF domain
SMARTSM003803.6E-341679IPR001471AP2/ERF domain
PRINTSPR003671.2E-111728IPR001471AP2/ERF domain
CDDcd000182.47E-251774No hitNo description
PfamPF008473.4E-101765IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-291774IPR001471AP2/ERF domain
PRINTSPR003671.2E-115575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGEGKNKHRE HKEKSPYRGI RMRKWGKWVA EIREPNKRSR IWLGSYSSPV AAARAYDTAV  60
FHLRGPSAPL NFPEYIAGEE EVRDISAATI RKKAAEVGAR VDAIETAQYH VPSEGNSGRV  120
SEKPDLNEYP NPEKSDGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1513781178Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082291.16e-66PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotO221741e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2R6R3B26e-95A0A2R6R3B2_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_18s0001g10150.t013e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-50DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]