PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn131561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Protein Properties

Length: 1253aa MW: 139397 Da PI: 6.5456

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn131561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1.1e-10	146	220	1	81
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k ++ps+v+ +l lp f++++ ++k+ tltl de+g+++ + ++ + l++GW++F ++gL +gD + Achn131561 146 FVKPMLPSHVTGGFWLGLPSYFCNNI-LPKND-GTLTLVDEEGEEYPTVY--LARK--FGLSGGWRGFSIEHGLVDGDALR 220 89*******************666.45444.49***********..4444..77****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04084	4.6E-12	16	62	IPR007220	Origin recognition complex, subunit 2
Gene3D	G3DSA:2.40.330.10	5.1E-12	142	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.8E-15	142	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.52E-19	144	219	No hit	No description
PROSITE profile	PS50863	9.375	146	243	IPR003340	B3 DNA binding domain
SMART	SM01019	9.8E-12	146	235	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-9	146	221	IPR003340	B3 DNA binding domain
Pfam	PF04278	1.6E-25	219	321	IPR007378	Tic22-like
Pfam	PF04278	3.2E-33	318	396	IPR007378	Tic22-like
Pfam	PF05701	2.1E-16	539	577	IPR008545	WEB family
Pfam	PF05701	1.9E-212	624	1157	IPR008545	WEB family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006260	Biological Process	DNA replication
GO:0000808	Cellular Component	origin recognition complex
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1253 aa Download sequence Send to blast
MERPCLLFTF FLERSTCGFG LLMYGIGSKK ALLEDFASTV LTECRVLVIN GYLPSINLKQ 60 AKKATPRIIR KELVAVRRSG RISKSPAPVY KEIVTYERFE YSRRNLSGVY KRDLSNRVYA 120 SDEARATAIT RAEELELGLG ADYPTFVKPM LPSHVTGGFW LGLPSYFCNN ILPKNDGTLT 180 LVDEEGEEYP TVYLARKFGL SGGWRGFSIE HGLVDGDALR LGGELASRLG DTRRLAAAAA 240 QKRCRLLPPP SLSSLPFASV KHAFDVALSS NHVAKTLSGT SVFTVSNSNN EFVLISDPNS 300 MKSIGLLCFR KEDADAFLAQ VYMLKVEGIA FRFMPDPVQI KNALELKASD IKSGFDGVPI 360 FQSDLLVVKK KNRRYCPIYF RKVGSLEDVL KKMERVVGME AAENTEVNCP PESTGAPSLS 420 SQNKDRSNNE DPINEDVKRE VVDFSKLSTK DENGINNTTT TTEEENVRVL AEPISTNTSE 480 AKPKDALEKS PRVKDTENDH HVVHSNAVAL PRAQVTEDAI EMPVAIYPSK HLKKVDTNRV 540 QIDTAAPFES VKAAVSKFGG IVDWKAHRVQ TVEEITCVIA FMNLYFITFF FYTARVARDG 600 KNQTVYTFIN GFTSSKNNCK FLCRHMQKRK VIEDELEKAQ AEIPLYKKQS ETAEDAKIRV 660 LKELDSTKRL IEELKLNLER AQTEEHQAKQ DSELAKLRVE EMAQGIADEA SVAAKAQLEV 720 ARARHTAAVS ELQTVKDELK QLRKNYDSIV MDKDLAVKRA EEAVSESNEV EKTVEELMID 780 LITTQESLDS AHAAHLEAEE KKIGAAMARE QDTLNWEKEL KQAEEELERL NQQISSAKDL 840 KSKLITASAL LADLKIELGA YMASKLEEEI NDGGELEGPE KRTHSDIQAA VDSTKKELEE 900 VKLSIEKATA EVKCFKVAVA SLKVELEREK SELAVLSQRE GMASVTVASI EAEVSRTRLE 960 IAVIQTKERE AKEKMVELPK QLQEAAQEAD QAKSLAQTAR EELCKAKEEA EQAKAAASTM 1020 ESRLLAARKE IEAAKASEQL ALSAINALKE SELSQITKGE DSPAGVTLSL EEYYELSKRA 1080 HDAEEQTNTR VAAAVSQIEL AKESELRSLK KLEEVGLEMA AQKEALEIAL QKAEKAKGGK 1140 LGVEQELRKW RAESEQRRKV GELGQGQEVK QVKSPRASVE ERKEFKESNN FVQLPDAPIQ 1200 HSLSPRAAHV SGNNTETKPS LEVKVVKQKK KSFFSRIFMF MVKKKARGTK SM*

Sequence ? help Back to Top

Protein Sequence Length: 1253 aa Download sequence Send to blast

MERPCLLFTF FLERSTCGFG LLMYGIGSKK ALLEDFASTV LTECRVLVIN GYLPSINLKQ  60
AKKATPRIIR KELVAVRRSG RISKSPAPVY KEIVTYERFE YSRRNLSGVY KRDLSNRVYA  120
SDEARATAIT RAEELELGLG ADYPTFVKPM LPSHVTGGFW LGLPSYFCNN ILPKNDGTLT  180
LVDEEGEEYP TVYLARKFGL SGGWRGFSIE HGLVDGDALR LGGELASRLG DTRRLAAAAA  240
QKRCRLLPPP SLSSLPFASV KHAFDVALSS NHVAKTLSGT SVFTVSNSNN EFVLISDPNS  300
MKSIGLLCFR KEDADAFLAQ VYMLKVEGIA FRFMPDPVQI KNALELKASD IKSGFDGVPI  360
FQSDLLVVKK KNRRYCPIYF RKVGSLEDVL KKMERVVGME AAENTEVNCP PESTGAPSLS  420
SQNKDRSNNE DPINEDVKRE VVDFSKLSTK DENGINNTTT TTEEENVRVL AEPISTNTSE  480
AKPKDALEKS PRVKDTENDH HVVHSNAVAL PRAQVTEDAI EMPVAIYPSK HLKKVDTNRV  540
QIDTAAPFES VKAAVSKFGG IVDWKAHRVQ TVEEITCVIA FMNLYFITFF FYTARVARDG  600
KNQTVYTFIN GFTSSKNNCK FLCRHMQKRK VIEDELEKAQ AEIPLYKKQS ETAEDAKIRV  660
LKELDSTKRL IEELKLNLER AQTEEHQAKQ DSELAKLRVE EMAQGIADEA SVAAKAQLEV  720
ARARHTAAVS ELQTVKDELK QLRKNYDSIV MDKDLAVKRA EEAVSESNEV EKTVEELMID  780
LITTQESLDS AHAAHLEAEE KKIGAAMARE QDTLNWEKEL KQAEEELERL NQQISSAKDL  840
KSKLITASAL LADLKIELGA YMASKLEEEI NDGGELEGPE KRTHSDIQAA VDSTKKELEE  900
VKLSIEKATA EVKCFKVAVA SLKVELEREK SELAVLSQRE GMASVTVASI EAEVSRTRLE  960
IAVIQTKERE AKEKMVELPK QLQEAAQEAD QAKSLAQTAR EELCKAKEEA EQAKAAASTM  1020
ESRLLAARKE IEAAKASEQL ALSAINALKE SELSQITKGE DSPAGVTLSL EEYYELSKRA  1080
HDAEEQTNTR VAAAVSQIEL AKESELRSLK KLEEVGLEMA AQKEALEIAL QKAEKAKGGK  1140
LGVEQELRKW RAESEQRRKV GELGQGQEVK QVKSPRASVE ERKEFKESNN FVQLPDAPIQ  1200
HSLSPRAAHV SGNNTETKPS LEVKVVKQKK KSFFSRIFMF MVKKKARGTK SM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	373	VKKKNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation. {ECO:0000269\|PubMed:20974974}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ382142	1e-54	FQ382142.1 Vitis vinifera clone SS0ABG6YA13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028067579.1	0.0	protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like
Swissprot	O48724	0.0	WEB1_ARATH; Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
TrEMBL	A0A2R6R3F0	0.0	A0A2R6R3F0_ACTCH; Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 like
STRING	EOY14472	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-38	B3 family protein

Publications ? help Back to Top
Kodama Y,Suetsugu N,Kong SG,Wada M Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(45): p. 19591-6 [PMID:20974974] Gardiner J,Overall R,Marc J Putative Arabidopsis homologues of metazoan coiled-coil cytoskeletal proteins. Cell Biol. Int., 2011. 35(8): p. 767-74 [PMID:21284606] Deng Z, et al. Blue light-induced proteomic changes in etiolated Arabidopsis seedlings. J. Proteome Res., 2014. 13(5): p. 2524-33 [PMID:24712693] Suetsugu N,Higa T,Kong SG,Wada M PLASTID MOVEMENT IMPAIRED1 and PLASTID MOVEMENT IMPAIRED1-RELATED1 Mediate Photorelocation Movements of Both Chloroplasts and Nuclei. Plant Physiol., 2015. 169(2): p. 1155-67 [PMID:26324877] Suetsugu N,Wada M Two Coiled-Coil Proteins, WEB1 and PMI2, Suppress the Signaling Pathway of Chloroplast Accumulation Response that Is Mediated by Two Phototropin-Interacting Proteins, RPT2 and NCH1, in Seed Plants. Int J Mol Sci, 2018. [PMID:28698471]