PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn129041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 442aa MW: 48025.6 Da PI: 6.7605 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.6e-32 | 241 | 296 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Achn129041 241 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 296 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.204 | 238 | 298 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 239 | 299 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-17 | 239 | 299 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-26 | 241 | 296 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-7 | 243 | 294 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MMASPPELSL DCKPHSYSML LKSFGDQTDQ TQKLEDFLAR LEEERLKIDA FKRELPLCMQ 60 LLTNAMEASR QQLQTYRMDQ GPVLEEFIPM KNSSSELGLE KDSNVSDMAS WMTSAQLWSP 120 ASDAAKQQQM TILTSPKERE IGFGVSPKLG LDNKQRNGGA FLPFSKEKNS GLSPTLALAN 180 SGGEVGEEKK VLEGENGNGG LRRESCVKAG LGEQGQGGNI PADSQANGNG AAAARNQSHR 240 KARRCWSPDL HRRFVNALQM LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP 300 SPCPQATGAP TPQLVVLGGI WVPQEYASAA HGGAPQTLYS THPTTHVPPH YCAPQVPQEF 360 YTAPAASAHH QLHHHQLHMY HHGSPESDVR GGGDKSESME DGKSESSSGG ENGGGEGERK 420 GLGTLRDERE ESKGSEITLT F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-13 | 241 | 294 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 241 | 294 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 241 | 294 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 241 | 294 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002529346.1 | 0.0 | myb family transcription factor EFM | ||||
Refseq | XP_010254263.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | Q9ZQ85 | 1e-127 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A2R6Q4R9 | 0.0 | A0A2R6Q4R9_ACTCH; Myb family transcription factor EFM like | ||||
STRING | XP_002529346.1 | 0.0 | (Ricinus communis) | ||||
STRING | XP_010254263.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8794 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-117 | G2-like family protein |
Publications ? help Back to Top | |||
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