PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn128261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 203aa MW: 23175.2 Da PI: 9.9701 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.7 | 1e-09 | 132 | 197 | 2 | 71 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 +Y ++Ake GF v k++skk ++g ++ ++Cs+ gk++++ ++ + r++ +++C +l+v ++ Achn128261 132 YYTRFAKEKGFAVAKRSSKKG-KEGMLKHVILQCSRGGKPRPRGSN---PAKARPQYKMECPVHLNVMRT 197 8***************99988.7777*****************999...899999*********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-6 | 132 | 197 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKQAEQNGRE GKREKRGRRD PLSGVPQPRQ LNHPPTSLHN NGAQSKKTFQ LKKISKKTID 60 STRTPYQPSQ VEWDEEVESW SVDIGEQEEE VSNDSIMKDC VDGKEVNGNF EERVEEPKMG 120 MEFDTHDEAY LYYTRFAKEK GFAVAKRSSK KGKEGMLKHV ILQCSRGGKP RPRGSNPAKA 180 RPQYKMECPV HLNVMRTKIR IS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | KRSSKKGKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17402 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-07 | FAR1 family protein |