PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn127991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 475aa    MW: 53019.9 Da    PI: 5.8392
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn127991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-073914242154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  Achn127991 391 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 424
                 469*****************************87 PP
2ELK223.7e-08345366122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+ +Y+++++++++E++
  Achn127991 345 ELKHELKEGYKEKIVDIREEIL 366
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.7E-20180224IPR005540KNOX1
PfamPF037901.7E-17182223IPR005540KNOX1
SMARTSM012568.0E-31233288IPR005541KNOX2
PfamPF037911.6E-21237287IPR005541KNOX2
PROSITE profilePS512139.673345365IPR005539ELK domain
PfamPF037898.8E-6345366IPR005539ELK domain
SMARTSM011880.0024345366IPR005539ELK domain
PROSITE profilePS5007111.726365428IPR001356Homeobox domain
SMARTSM003894.7E-11367432IPR001356Homeobox domain
SuperFamilySSF466895.99E-16367431IPR009057Homeodomain-like
CDDcd000861.51E-11368429No hitNo description
Gene3DG3DSA:1.10.10.605.2E-25372429IPR009057Homeodomain-like
PfamPF059201.4E-17385424IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAFPNHLSQE MALQHFPDQH LDENTSVRRT ILPQQLGQPS PEEAGKAPEN QHRPPPQVGV  60
GPTWLNSAIL RQQSHYGGGS NFLNLHTNSD SPTSQASNQW LSRSILQRNV SDVRDDVHSS  120
SDSMMAAAIS HESADLNNDN NDNRAIGGNQ AENNGGVGGE LMESDVAGGG GGGMMNWQNA  180
RYKSEILSHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS ALGQGNIGDD  240
KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGIS PGEGTGATMS  300
DDDEDQLDSD TNFFDGSLEG NDSMNFGPLV PTESERSLME RVRQELKHEL KEGYKEKIVD  360
IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN  420
QRKRNWHSNP STSTVLKSKR KSFLSLKTYM QWSCQAFYNN GARAIYMKDA SYQG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115052.10.0homeobox protein knotted-1-like 3
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2R6QZC80.0A0A2R6QZC8_ACTCH; Homeobox protein knotted-1-like (Fragment)
STRINGXP_010265705.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-178KNOTTED1-like homeobox gene 3