PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn127441

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Protein Properties

Length: 459aa MW: 51253.5 Da PI: 3.885

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn127441	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.2	2.1e-11	65	119	33	87
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++l + r+We++l+y+ g++++t+GW++Fv++n L+ g ++ F+ +r Achn127441 65 QLLISLIGDEVREWEMTLKYSCAEGAFMITNGWEKFVQDNMLQGGNTIQFYKPNR 119 45678888888*****99999999**********************93333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-8	66	134	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.3E-8	67	123	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-7	67	130	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.546	68	134	IPR003340	B3 DNA binding domain
CDD	cd10017	2.53E-7	68	115	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.4E-11	239	329	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-11	243	329	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-9	246	324	No hit	No description
PROSITE profile	PS50863	8.586	246	353	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MDPKRFTGTE KKEQLKETKF DSNVSGEGEP SFSTPTDPAT EKENSDLMED PKSGNSPPGQ 60 ILPEQLLISL IGDEVREWEM TLKYSCAEGA FMITNGWEKF VQDNMLQGGN TIQFYKPNRR 120 RRNNHYNIRC IRGEEFGNAA TCHQGEGYLF QHPLTLDDVS SNRLIIPTEY ATSYFFGFES 180 MDEHVSGEGQ HPTTETESSN KINVSGDDSR SRSQTENSGF ATETEEEEEE EEEPGNSSSE 240 TEDENWPIQK RLTPTDVEEY LFLPFRSLSA YPDYFPRLSE PKDLLIIDSR NQFWSMKVVF 300 DQERDGYVVT GMWKEFVNKH KLKATQKIKL NIPYFGLGSE SSTYFNIVCM RKEGDSVTDL 360 SSMGSEENEG NSDDQSDDLD GNSDEQGDDE EGNSGKQGDD EGNSGDDEED DEEGNSGQQG 420 DDEGNPGDDE EGNLGEQGDD EGDSDDDDGG FSSQGSIN*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MDPKRFTGTE KKEQLKETKF DSNVSGEGEP SFSTPTDPAT EKENSDLMED PKSGNSPPGQ  60
ILPEQLLISL IGDEVREWEM TLKYSCAEGA FMITNGWEKF VQDNMLQGGN TIQFYKPNRR  120
RRNNHYNIRC IRGEEFGNAA TCHQGEGYLF QHPLTLDDVS SNRLIIPTEY ATSYFFGFES  180
MDEHVSGEGQ HPTTETESSN KINVSGDDSR SRSQTENSGF ATETEEEEEE EEEPGNSSSE  240
TEDENWPIQK RLTPTDVEEY LFLPFRSLSA YPDYFPRLSE PKDLLIIDSR NQFWSMKVVF  300
DQERDGYVVT GMWKEFVNKH KLKATQKIKL NIPYFGLGSE SSTYFNIVCM RKEGDSVTDL  360
SSMGSEENEG NSDDQSDDLD GNSDEQGDDE EGNSGKQGDD EGNSGDDEED DEEGNSGQQG  420
DDEGNPGDDE EGNLGEQGDD EGDSDDDDGG FSSQGSIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6PPE2	0.0	A0A2R6PPE2_ACTCH; B3 domain-containing protein