PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn125631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRF | ||||||||
Protein Properties | Length: 538aa MW: 57711.5 Da PI: 8.6003 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 194 | 238 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Achn125631 194 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 238 79****************************************985 PP | |||||||
2 | QLQ | 60.9 | 3.4e-21 | 124 | 160 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++ an+P+P++Ll +i+k Achn125631 124 GPFTPSQWMELEHQALIYKHITANVPIPSNLLIPIRK 160 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-12 | 124 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.633 | 125 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-15 | 125 | 159 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 194 | 238 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.2E-21 | 195 | 237 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MDLGMVGLDG LLYPSLSSDP EAKQRWYGSG FLKQERPKEE ASEDDLRASK VAKTCDFSVN 60 SKPMPLLRSS GSLFSEGQQM LSFSSPSCSQ AVTFPLYQHP STAYSRNTGG YGCGGGGVFG 120 GVKGPFTPSQ WMELEHQALI YKHITANVPI PSNLLIPIRK ALDSAGLYGF SGGPLGPTSL 180 GWGAFRLGFS NSTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQT 240 GHSVSGPNTT AATTAKLMPM ASSTSASVVP CGGSVSNSLG LAHHPQLKNM QPGGTNPCAS 300 SPNSRVFLNK ENVGETIQET QFSIPKHHNP YGLDSSRAEF GLVCSNSLLN PLHKASSLIA 360 CKNYGPSHAP NATEAESHHS LRQFMDVWPN KNQPDRTHLS ISIPVAPADF TSSTSSPALS 420 PLRLSRELES TQMGLGVGNV VNEPNQRQAN WIPISWEYSM GGPFGEVLHS TNSGCGDYKN 480 SSALNLMTEG WDVSPRLASS PTGVLQKMTF GSFSNSSAGS SPRAESHRTH EGASFFQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065837.1 | 0.0 | growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A2R6QY45 | 0.0 | A0A2R6QY45_ACTCH; Growth-regulating factor like | ||||
STRING | EOY15657 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 5e-79 | growth-regulating factor 1 |