PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn125631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 538aa    MW: 57711.5 Da    PI: 8.6003
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn125631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.31.5e-24194238145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Achn125631 194 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 238
                 79****************************************985 PP

2QLQ60.93.4e-21124160137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 ++FT++Q+++L++Q+l+yK++ an+P+P++Ll +i+k
  Achn125631 124 GPFTPSQWMELEHQALIYKHITANVPIPSNLLIPIRK 160
                 59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.3E-12124160IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.633125160IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-15125159IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663194238IPR014977WRC domain
PfamPF088796.2E-21195237IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDLGMVGLDG LLYPSLSSDP EAKQRWYGSG FLKQERPKEE ASEDDLRASK VAKTCDFSVN  60
SKPMPLLRSS GSLFSEGQQM LSFSSPSCSQ AVTFPLYQHP STAYSRNTGG YGCGGGGVFG  120
GVKGPFTPSQ WMELEHQALI YKHITANVPI PSNLLIPIRK ALDSAGLYGF SGGPLGPTSL  180
GWGAFRLGFS NSTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQT  240
GHSVSGPNTT AATTAKLMPM ASSTSASVVP CGGSVSNSLG LAHHPQLKNM QPGGTNPCAS  300
SPNSRVFLNK ENVGETIQET QFSIPKHHNP YGLDSSRAEF GLVCSNSLLN PLHKASSLIA  360
CKNYGPSHAP NATEAESHHS LRQFMDVWPN KNQPDRTHLS ISIPVAPADF TSSTSSPALS  420
PLRLSRELES TQMGLGVGNV VNEPNQRQAN WIPISWEYSM GGPFGEVLHS TNSGCGDYKN  480
SSALNLMTEG WDVSPRLASS PTGVLQKMTF GSFSNSSAGS SPRAESHRTH EGASFFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065837.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A2R6QY450.0A0A2R6QY45_ACTCH; Growth-regulating factor like
STRINGEOY156570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-79growth-regulating factor 1