PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn124861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 285aa    MW: 31914.2 Da    PI: 6.799
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn124861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61.1e-1524114186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k++ ++ +    s++p+f  l+
  Achn124861  24 CWSEEATATLVDAWGRRYMELNRGNLRQKDWQEVADAVnsvhgHNKKARRTDVQCKNRIDTLKKKYKIEKARVSDSNRAIASSWPFFACLD 114
                 7****************************************999999***************************99999999*****8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2522114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGELTESSTP QTAPPRAPPF REDCWSEEAT ATLVDAWGRR YMELNRGNLR QKDWQEVADA  60
VNSVHGHNKK ARRTDVQCKN RIDTLKKKYK IEKARVSDSN RAIASSWPFF ACLDVLIGPA  120
ATAKKLPQPP PLQVSSPPLA LPLPYRKPPG ATVHPVVLLP QKRPSPALDD SYFGRDYSAI  180
AAAAAAEEEE EREGSEELES SEESGEVEGM KRLASAIERF GKIYQRIEGE KQSQMIELEK  240
QRMQFAKDLE IQRMQLFMDT QVQLEKIKQA KRSGSDGEIL LPLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273017.21e-127PREDICTED: trihelix transcription factor ASIL1 isoform X5
RefseqXP_010655523.11e-127PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBLA0A2R6RGB90.0A0A2R6RGB9_ACTCH; Trihelix transcription factor
STRINGVIT_10s0003g01300.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-41sequence-specific DNA binding transcription factors