PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn121261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SBP
Protein Properties Length: 475aa    MW: 51991 Da    PI: 7.9771
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn121261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP99.62.7e-31119187277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dls++k+yh+rhkvCevhsk+++vlv+g+eqr       fh l efD++krsCr+rLa+hnerrrk++
  Achn121261 119 CQVYGCKKDLSSCKDYHKRHKVCEVHSKTAKVLVNGIEQR-------FHLLGEFDDGKRSCRKRLAGHNERRRKPH 187
                 **************************************97.......7**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-24113173IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.119116186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-30117189IPR004333Transcription factor, SBP-box
PfamPF031109.2E-21119185IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEGNGFVLNE PISIENQGFV ELGFPEMMGK SWPGKNLVKD CFSSKVVSEK FPIPMASTAN  60
VFSGEEDFSS SVVESNSRDS SLIDLNLGRI ADHRNGQDLS SSAPAKRVRV GLSSKTPFCQ  120
VYGCKKDLSS CKDYHKRHKV CEVHSKTAKV LVNGIEQRFH LLGEFDDGKR SCRKRLAGHN  180
ERRRKPHMGI HSGRTGRLLQ SYNGSRFRGN TLTASSFLCQ DILPSTLLPP QTHDTNDWGR  240
RIKLEDGVDY CSQSAIPIAN GDPHPKSLFH HGFGKPCPPF HANGVNSATG RDFNMISGYL  300
HDLGARDSLS RSLAQTIGSE DFNLFDSAST VQGQSGMSTP GCALSLLSSQ SQNSSSHSSG  360
IPMAQPLYVS GSHPHYSVSQ GSGKILGASQ SPKFNSSRLS YMEENHFGPI LISDDGEAVN  420
FPYGIFRGSQ YMNARDSLSS EDGPTIDLLQ LSSQLQRVEH ERQFMLTNQK NDSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-21113185584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092789.10.0teosinte glume architecture 1-like isoform X2
TrEMBLA0A2R6PU120.0A0A2R6PU12_ACTCH; Squamosa promoter-binding-like protein
STRINGEOY221291e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-40SBP family protein