PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn120641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 16654.3 Da PI: 7.6698 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.5 | 2.2e-19 | 65 | 140 | 14 | 89 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 ++C + p + a +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rd y v++i++lqqql+ Achn120641 65 DKCHIEPSLEALGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDLFYVFVAHIFALQQQLDA 140 68***********************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.994 | 51 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-19 | 65 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGKAIQKQNH NSEAHGFWVC LEWGKGRPLI LEFQKVEDDR NKKGQKRVSR NGYVLLLEDN 60 VPDVDKCHIE PSLEALGAAH FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TICYEAQARL 120 RDLFYVFVAH IFALQQQLDA IGIIEME* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-14 | 67 | 138 | 26 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-14 | 67 | 138 | 26 | 97 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445237.1 | 5e-31 | LOB domain-containing protein 18 | ||||
Refseq | XP_006491458.1 | 5e-31 | LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 1e-28 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A067HD70 | 1e-29 | A0A067HD70_CITSI; Uncharacterized protein | ||||
TrEMBL | M1AYU8 | 3e-30 | M1AYU8_SOLTU; Uncharacterized protein | ||||
TrEMBL | V4TY07 | 1e-29 | V4TY07_9ROSI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033253 | 4e-31 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-31 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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