PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn119271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 27699.3 Da PI: 5.9697 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.9 | 3.3e-54 | 75 | 178 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+ fw++q ie++t+fknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw h+eenkrrtl+k+diaaa+trt+ifdflvd+v Achn119271 75 QLHGFWANQhqdIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWDHTEENKRRTLQKNDIAAAITRTEIFDFLVDVV 173 7899***99999*************************************************************************************** PP NF-YC 97 prdel 101 pr+el Achn119271 174 PREEL 178 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.36E-32 | 69 | 169 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.3E-37 | 89 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.3E-22 | 97 | 160 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDQQGHAQPQ ETGLVPSSSH MPYSSTAYEA TQMMRPPTAA SVGSVQPPQI AGQLAQHQLA 60 YQQIHQQQQQ QLQHQLHGFW ANQHQDIEQT TEFKNHSLPL ARIKKIMKAD EDVRMISAEA 120 PVVFARACEM FILELTLRSW DHTEENKRRT LQKNDIAAAI TRTEIFDFLV DVVPREELKD 180 EVVGAIPSGA LPVGGPGDGL PYYYMPQQVG ALGMFIGKPV DQALYGQQPH PYTAAQMWPQ 240 QQQPPPGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-59 | 83 | 175 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 153 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108154.1 | 1e-125 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_028108155.1 | 1e-125 | nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 4e-78 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2R6Q3K4 | 0.0 | A0A2R6Q3K4_ACTCH; Nuclear transcription factor Y subunit C-9 like | ||||
STRING | POPTR_0010s03730.1 | 1e-111 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 8e-77 | nuclear factor Y, subunit C9 |