PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn118621
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 319aa    MW: 33281.1 Da    PI: 6.5043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn118621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011165187123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++Fs+   L  H  +H
  Achn118621 165 YRCKTCDRTFSSFRALGGHTTSH 187
                 9**********988887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.7E-9164187IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-7164229No hitNo description
PROSITE profilePS5015712.528165192IPR007087Zinc finger, C2H2
SMARTSM003550.076165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
PfamPF139122.1E-10206231IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954207234IPR007087Zinc finger, C2H2
SMARTSM003550.39207229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASLHLQYSA LCLLSLSLSL SRNIELVIRK QIIKGKRTKR KRSPSSPIPI SISMANCSPS  60
GKGGGGYGDN DVNTATATTT TTPWHLKTTD EDVDAGESLI LLSLGQPRDP NGDDQEKVAS  120
EFTSEQYLDR QTIGVGGVGV GVGGGEVGGG GSGGDGGGEV GVVVYRCKTC DRTFSSFRAL  180
GGHTTSHTRP KPQVASCDNP KASSKVHECL ICGAEFASGQ ALGGHMTRHR GSVGTNNPRL  240
SSGSNGLEFQ DQEAKRGRIV LPLDLGLGLN LSAPKDDRLL GSNEGFSSEQ QDQPSPPIVL  300
SITLALEDCH SDNVPQID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RYY51e-146A0A2R6RYY5_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.17e-23C2H2 family protein