PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn117281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 19249.3 Da PI: 9.9646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t++ Aa+a++aa ++l+g Achn117281 31 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPDAAARAYDAALLCLKG 81 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.60E-18 | 31 | 89 | No hit | No description |
SMART | SM00380 | 3.5E-30 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-29 | 32 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-19 | 32 | 91 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.114 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVKSEHKIQT QPNKAMPSSS SSSSSSSMIK KKYKGVRMRS WGSWVSEIRA PNQKTRIWLG 60 SYSTPDAAAR AYDAALLCLK GKSVNLNFPT SSSFFHHHHH DTVLSPKSIQ RVAAAAAAAN 120 SFNDTTNPPP PPLPSTSSSS SSTTTTSSSS CSASSPSMSS SPFNHIEDDF SLASSLDDYT 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ228458 | 2e-36 | FJ228458.1 Glycine max AP2 domain-containing transcription factor 6 (AP2-6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660750.1 | 1e-47 | ethylene-responsive transcription factor ERF014-like | ||||
Swissprot | Q9SFE4 | 6e-44 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A2R6Q1X6 | 2e-62 | A0A2R6Q1X6_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | POPTR_0002s08610.1 | 1e-45 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6177 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-31 | ERF family protein |
Publications ? help Back to Top | |||
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