PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn115261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 263aa    MW: 28895.3 Da    PI: 8.9951
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn115261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.59.3e-33117173158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Achn115261 117 DEPIYVNPKQYHAILRRRQYRAKLEAQNKL-SKARKPYLHESRHLHALKRARGSGGRF 173
                 79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-37115176IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.972116176IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.0E-28118173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-23119141IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-23150173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MATPNQHDHN LKQMGFRFQD QDSSSTQSTG QSHHEVASIG ESDPYGQSII SKQSGYNGAH  60
GKPVVGQLKS AALMGTQDCV LPPSQVNYIP SFACIPLSYP DPYYSGLLTA CGPRAMDEPI  120
YVNPKQYHAI LRRRQYRAKL EAQNKLSKAR KPYLHESRHL HALKRARGSG GRFVNTKKLE  180
ELKPSTANGQ DMFASSQLHF STNMSGAEVC QPEHCKEGAS TTSCSDLTSV SNSDSVFRQQ  240
EFRFSVYPTC IGGNQHSLSV PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-22116177162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096711.11e-124nuclear transcription factor Y subunit A-3-like
RefseqXP_028096712.11e-124nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH26e-54NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2R6PV020.0A0A2R6PV02_ACTCH; Nuclear transcription factor Y subunit A-3 like
STRINGXP_008228224.14e-87(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-53nuclear factor Y, subunit A3