PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn114041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 514aa MW: 56909.4 Da PI: 6.9718 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.3 | 2.6e-113 | 144 | 512 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cAeav+ +d++ a+ lL++l+ a g+++qR+a++f+++La rl+ ++ + + + + ++ +e+ al+l +e++P ++f+h++aN Achn114041 144 FQLLISCAEAVACRDKSYASVLLSELRASALVFGSSFQRVASCFVQGLADRLTLVQPLGAVGFIMPTVMNSALDEKEEALRLVYEICPHIQFGHFVANA 242 589**************************************************9444333333333333456999999********************* PP GRAS 101 aIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 +Ilea+ege+ vH++D+++s +G QW L+q+La+R+++pp lRiT vg ++ + +g++L+ +A++lg++fef++ v+++le+l++e++ Achn114041 243 TILEAFEGESFVHVVDLGMSlglpHGHQWQHLIQSLATRSGQPPlCLRITSVGL----FVKQFQIIGNKLKTYAQTLGLNFEFSI-VETNLENLKPEHI 336 ****************99874444678*************999989********....99************************9.799********** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + +++E+l+Vn++lqlh +++es + +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++++++e Achn114041 337 KRHNNEVLVVNSILQLHCVVKESRGALN---SVLQVIHELSPKALVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAEE 432 ********************88877777...8******************************************************************* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++ +++qak l k+k +dg+++ ee+g+lvlgWk++p+v++S+W+ Achn114041 433 IKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPAPIK--MMAQAKQWLGKIKvGDGFTIVEEKGCLVLGWKSKPIVAASCWK 512 ***********************************96..789***************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.583 | 117 | 493 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.1E-111 | 144 | 512 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 514 aa Download sequence Send to blast |
MAQSPLSYDL CGVGIDDVSG LDLSLSAMAY YPSSYMPILE TTASTWFPIV SDENGSHKRL 60 KRTTSVPEVA LANVGFSHGQ GSISRNSSTN SLHTFPRLQF RNHILTYTQR YLAAEAVEEA 120 AAAIIGLENA KAEEDGSGDE MRLFQLLISC AEAVACRDKS YASVLLSELR ASALVFGSSF 180 QRVASCFVQG LADRLTLVQP LGAVGFIMPT VMNSALDEKE EALRLVYEIC PHIQFGHFVA 240 NATILEAFEG ESFVHVVDLG MSLGLPHGHQ WQHLIQSLAT RSGQPPLCLR ITSVGLFVKQ 300 FQIIGNKLKT YAQTLGLNFE FSIVETNLEN LKPEHIKRHN NEVLVVNSIL QLHCVVKESR 360 GALNSVLQVI HELSPKALVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL DAMLPKYDTR 420 RAKIEQFFFA EEIKNIVSCE GPARVERHEK VDQWRRRMSR AGFQPAPIKM MAQAKQWLGK 480 IKVGDGFTIV EEKGCLVLGW KSKPIVAASC WKC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-60 | 127 | 511 | 7 | 378 | Protein SCARECROW |
5b3h_A | 4e-60 | 150 | 511 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-60 | 150 | 511 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063309.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2R6PS62 | 0.0 | A0A2R6PS62_ACTCH; DELLA protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66350.1 | 6e-82 | RGA-like 1 |