PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn112511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52650.7 Da PI: 6.248 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 436 | 2.7e-133 | 46 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ v++g+ e+a+ L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s ++see+ a++lf++++P+l++s++++N Achn112511 46 LIQLLVACANQVAAGSVEKANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTKIS--SVSEEILAQRLFFDLCPFLRLSYVITN 142 689*************************************************************999998..6************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI ea+ege+ vHiiD+ +++QW+ LlqaL++Rpegpp+l+iTg+++ +ke le +++rL++ A +l++pf+fn+ ++++le+l++e Lrvk+ Achn112511 143 LAIIEAMEGEKVVHIIDLHSFEPAQWIDLLQALSARPEGPPHLKITGIHE----QKEVLELMAHRLNEEAGKLDIPFQFNP-IVSKLENLDIECLRVKT 236 **************************************************....9**************************.7999************* PP GRAS 199 gEalaVnlvlqlhrll..........................................................desvsleserdevLklvkslsPkvv 239 gEala+++vlqlh++l ++s + ++Lk++++lsPk++ Achn112511 237 GEALAISSVLQLHSVLafddemlrrqspsaskslnsvpiqrvfqmssltlgdflekdvvngyspcidspspvsfASSPK----MGNFLKALRGLSPKLM 331 ******************************************************************9977655555555....555************* PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 vv+eqe++hn++s+++r++eal++y+alfd+le+++pr s er+kvE+ l+g+ei+n++aceg er+erhe+lekW rle aGF+ vpls++ qa Achn112511 332 VVTEQESNHNAHSLMDRVTEALNFYAALFDCLESTVPR-SIERQKVEKLLFGEEIKNIIACEGLERKERHERLEKWIPRLELAGFGRVPLSYHGILQAT 429 ***********************************966.789********************************************************* PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll+ ++ dgyr++ee+g+lv+ W++ pL+s+SaWr Achn112511 430 RLLQSYGCDGYRIKEEKGCLVIFWQTTPLFSISAWR 465 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.904 | 20 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-131 | 46 | 465 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MVQEEGSSSV NSSPLQLFSL MSLSPGLGSP YPWLRELKSE ERGLCLIQLL VACANQVAAG 60 SVEKANIGLE QISHLASPDG DTMQRIAAYF TEALADRMLK GWPGLHKALN STKISSVSEE 120 ILAQRLFFDL CPFLRLSYVI TNLAIIEAME GEKVVHIIDL HSFEPAQWID LLQALSARPE 180 GPPHLKITGI HEQKEVLELM AHRLNEEAGK LDIPFQFNPI VSKLENLDIE CLRVKTGEAL 240 AISSVLQLHS VLAFDDEMLR RQSPSASKSL NSVPIQRVFQ MSSLTLGDFL EKDVVNGYSP 300 CIDSPSPVSF ASSPKMGNFL KALRGLSPKL MVVTEQESNH NAHSLMDRVT EALNFYAALF 360 DCLESTVPRS IERQKVEKLL FGEEIKNIIA CEGLERKERH ERLEKWIPRL ELAGFGRVPL 420 SYHGILQATR LLQSYGCDGY RIKEEKGCLV IFWQTTPLFS ISAWRFRRYS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-48 | 30 | 467 | 2 | 380 | Protein SCARECROW |
5b3h_D | 1e-48 | 30 | 467 | 2 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108526.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
Refseq | XP_028108527.1 | 0.0 | scarecrow-like protein 3 isoform X2 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6RA36 | 0.0 | A0A2R6RA36_ACTCH; Scarecrow-like protein | ||||
STRING | VIT_13s0019g01220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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