PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn112031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 817aa    MW: 89944.5 Da    PI: 8.5108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn112031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-113053713298
                 --SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  32 esktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F+ ++  e++lv+++++
  Achn112031 305 EGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSWME-PEGKLVMGFRK 371
                 455699*************9989999999***9.********************876.77777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.3E-5290372IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-10295372IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-11296371No hitNo description
Gene3DG3DSA:2.40.330.109.3E-19296376IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-9305371IPR003340B3 DNA binding domain
PROSITE profilePS508638.614309373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MFGELRCRRL LRRRFASIRV VRMRWNGRGK AGVEGQASSR TSVIDALPPE RTKDLSTKNW  60
CPIAGSDPVP WRQAPSLLSS SSAQPDLQPR MPFEVGIPSG IDRLTSTERL SASSFEKNKL  120
EDSYERLVNG SQKLGAADIL ENGNAGISCG EQVNPSVNMP HKSPFSNNDT STSRFSVAVS  180
PNKASDQTKV SNSHAPRPTP YTVGKQFCGH NGADPFGDSQ ICNGRPQVDA RARNQLLPRY  240
WPRISAQELQ KISGEYPIVL CCAVLEIVWN VYLMTSVYHL RNPDIDYCIF VTVRQAYFPP  300
ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDIVTFSWME  360
PEGKLVMGFR KSSTAPPSDQ GSEPVNASNG VSTNGDISAR KIKTGEVLSK THPLKGKLIT  420
SGYLPIDLAN SADQASPWSK DVKSECVSKE VLGAKSSFRG TKKNSTLGSK NKRLRIEKED  480
VIQLKLTWEQ AQGLLRPPPN HVPSVVVIDG FEFEEYELHA RSAVIEIYVV ILSATRSSCS  540
AAQELTAEQL EELLPISNRA ASKKMKSSKQ DPDSVDLEGL DALADLAIQE EGEGLDASSQ  600
ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCLMV RRRFRTLSLR KEKKLSEKEA  660
ETALQKLQQH PNFPVIMSED NIRIITGEGN SSPNQKMVST EVPNDDPGRM RSSTLSPFKG  720
QIDLNIQPER DEELSPGSYS DGVMRMLQDA AERDHKQQRF SSSNNQNCTD QTQVGGNGVG  780
VNFGNSIIAF HRDPESEHPE PLSANAPSAS TSAAKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-3829537546126B3 domain-containing transcription repressor VAL1
5yzz_C2e-3829537546126B3 domain-containing transcription repressor VAL1
5z00_C2e-3829537546126B3 domain-containing transcription repressor VAL1
5z00_G2e-3829537546126B3 domain-containing transcription repressor VAL1
5z00_K2e-3829537546126B3 domain-containing transcription repressor VAL1
5z00_M2e-3829537546126B3 domain-containing transcription repressor VAL1
6j9a_A3e-3829537547127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056815.10.0B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A2R6QLK00.0A0A2R6QLK0_ACTCH; B3 domain-containing protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-90HSI2-like 1