PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 334aa    MW: 36617.8 Da    PI: 8.934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001899121223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C++Cg+ F  ++  + H  + H
  Achn111851  99 TCHKCGEQFAKWEAVEAHHLSkH 121
                 7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280100121IPR007087Zinc finger, C2H2
SuperFamilySSF563991.44E-19123332No hitNo description
Gene3DG3DSA:3.90.228.101.2E-6141331IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEPPTCSPRS IGSSEFLNPI THEVVFSDST CEIKITAFMG TLTPGTPGPG GHNHSHRVSS  60
TVPRNTARSF SRREGSGING VPSNPWGTFG KDSLGFTSTC HKCGEQFAKW EAVEAHHLSK  120
HAVTELVGGD SSRKIVELIC RTGWSKSNNN YGHIERILKV HNMQKTIARF EEYREMVKIK  180
ASKLQKKHPR CLADGNELLR FYSTTVECPL GTNGSSSLCL SDRCNVCRIL RHGFSAKKEL  240
KGGTIGVFTT STSGRALESI ELYDDNSIFG KALIVCRVIA GRVHRPLENF QELAGQSGFD  300
SLAGKMGLYS NIEELFLLNP RALLPCFVVI FKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098178.10.0uncharacterized protein LOC114297898
TrEMBLA0A2R6QLR30.0A0A2R6QLR3_ACTCH; Unconventional myosin-XVB like
STRINGXP_010267823.11e-174(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-137C2H2 family protein