PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn110081

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 365aa MW: 40722.7 Da PI: 8.4603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn110081	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	197	217	36	55
S-.STCHHHHHHHHHHHHHHH CS HLH 36 kK.lsKaeiLekAveYIksLq 55 k ++ a+iL A+eYI Lq Achn110081 197 KNlMDRASILGDAIEYIEALQ 217 446899*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.7E-4	199	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF50249	3.48E-11	298	362	IPR012340	Nucleic acid-binding, OB-fold
Gene3D	G3DSA:2.40.50.140	1.2E-12	303	362	IPR012340	Nucleic acid-binding, OB-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MTDLKFKNTI SLSSPWPPPN KSSKILLQAL LFEACSRTVN QIFKDQNLIE HVITRYKIIM 60 EQETITEQHD SGLILNVPPR DPLLGEHLTI WSHPIQDLNY FPRLPFLPPV SQPNHHRSFD 120 GSSIGSNPSN EQPSYNSGSI HLSRNGSVNE TIEKYPACKK SDSNGNLSSK KESGFLKGDS 180 NHLKPKQRIE WEPYHSKNLM DRASILGDAI EYIEALQKMV QVEVYQIGTK DFLLKLSCKH 240 KQGGFVRLME ALNSLGLQVI DANVSMYSGK VSNILKVEQE TCGSLILNFA EGMAEQKMKP 300 AAKIEQLRPL AEGLNLTVKV VSSKMIMPRG RDGNQGRQMR LAECLVGDET GIVVFTARND 360 QGLL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MTDLKFKNTI SLSSPWPPPN KSSKILLQAL LFEACSRTVN QIFKDQNLIE HVITRYKIIM  60
EQETITEQHD SGLILNVPPR DPLLGEHLTI WSHPIQDLNY FPRLPFLPPV SQPNHHRSFD  120
GSSIGSNPSN EQPSYNSGSI HLSRNGSVNE TIEKYPACKK SDSNGNLSSK KESGFLKGDS  180
NHLKPKQRIE WEPYHSKNLM DRASILGDAI EYIEALQKMV QVEVYQIGTK DFLLKLSCKH  240
KQGGFVRLME ALNSLGLQVI DANVSMYSGK VSNILKVEQE TCGSLILNFA EGMAEQKMKP  300
AAKIEQLRPL AEGLNLTVKV VSSKMIMPRG RDGNQGRQMR LAECLVGDET GIVVFTARND  360
QGLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028097167.1	9e-57	transcription factor bHLH90-like isoform X3
Refseq	XP_028097168.1	3e-57	transcription factor ABORTED MICROSPORES-like isoform X4
TrEMBL	A0A2R6RF27	1e-113	A0A2R6RF27_ACTCH; Transcription factor ABORTED MICROSPORES like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-14	bHLH family protein