PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn109391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 996aa    MW: 110092 Da    PI: 8.3362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn109391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY985.9e-3192148258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk++ers++dp++++itYeg H h
  Achn109391  92 DDGYKWRKYGQKSIKNSPHPRSYYRCTNPRCSAKKQMERSSDDPDTLIITYEGLHLH 148
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0145832.9283969IPR005936Peptidase, FtsH
PROSITE profilePS5081127.23286151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-2887148IPR003657WRKY domain
SuperFamilySSF1182906.93E-2688149IPR003657WRKY domain
SMARTSM007741.5E-3591150IPR003657WRKY domain
PfamPF031061.5E-2492148IPR003657WRKY domain
PfamPF064809.7E-9338433IPR011546Peptidase M41, FtsH extracellular
TIGRFAMsTIGR012412.7E-203445944IPR005936Peptidase, FtsH
Gene3DG3DSA:3.40.50.3001.7E-59503686IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525407.84E-68504751IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003821.0E-20540680IPR003593AAA+ ATPase domain
CDDcd000092.02E-26541678No hitNo description
PfamPF000045.8E-41545677IPR003959ATPase, AAA-type, core
PROSITE patternPS006740648666IPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:1.10.8.601.9E-24687754No hitNo description
PfamPF014346.2E-75740942IPR000642Peptidase M41
SuperFamilySSF1409901.23E-62761951No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MVQVILVKIY HDHIILVIIS IQNYAPPETA INHLVSAAYS VPTIDDINNA LSVTNHERHF  60
QDTRISMLEK DLSKAEHKYT LRIKSCGSGM ADDGYKWRKY GQKSIKNSPH PRSYYRCTNP  120
RCSAKKQMER SSDDPDTLII TYEGLHLHYA YPYFFLGPAQ HVNPPSKKLK STVSKADAQA  180
QVQESLPMEE YPRQSPTNLS SGPLYDPFVG FGQEGMGPQG LLEDMKTGSG CCGTRTVVSK  240
ELVSSNAGIE GGLGLVRGYL TSVGAGTVRQ LVSKTSLSEF SSIFSNPRLR RLFCTEVPKK  300
RNYENYYPKN KKEIPKEKNQ KSEFKGMFAV SGIFDLSLSG IKISFQEFKN KLLEHGLVDH  360
IVVTNKSVAK VYVKSSASDA RQINDDVVQG PSDGARASRS VSRYKYYFNI GSVDSFEEKL  420
EEAQEALGID PHNYVPVMYV SQMNWFQELM RFAPTALLLG TLYFMGKRMQ GGLGVGGPGG  480
KGGRGIFNIG KAQVTKMDKN SKNKVYFKDV AGCDEAKQEI MEFVHFLKNP KKYEELGAKI  540
PKGALLVGPP GTGKTLLAKA TAGESGVPFL SISGSDFMEM FVGVGPSRVR NLFQEARQCA  600
PSIVFIDEID AIGRARGRGG FSGGNDERES TLNQLLVEMD GFGTTAGVVV LAGTNRPDIL  660
DKALLRPGRF DRQITIDKPD IKGRDQIFRI YLTKLKLDQE PSYYSQRLAA LTPGFAGADI  720
ANVCNEAALI AARSESTQVT MEHFEAAIDR VIGGLEKKNK VISKLERRTV AYHESGHAVA  780
GWFLEHAEPL LKVTIVPRGT AALGFAQYVP NENLLMTKEQ LFDVTCMTLG GRAAEQVLLG  840
KISTGAQNDL EKVTKMTYAQ VAVYGFSDKV GLLSFPQRDD SFEMTKPYSS KTAAIIDNEV  900
REWVGKAYDR TLQLIEEHKE HVAQIAELLL EKEVLHQDDL VRVLGERPFK SSEPTNYDRF  960
KQGFQEDEKE PKQPTQDGTT VGNGSSPLEP EVVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nyy_A0.047797211506AFG3-like protein 2
6nyy_B0.047797211506AFG3-like protein 2
6nyy_C0.047797211506AFG3-like protein 2
6nyy_D0.047797211506AFG3-like protein 2
6nyy_E0.047797211506AFG3-like protein 2
6nyy_F0.047797211506AFG3-like protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable ATP-dependent zinc metallopeptidase. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124662.10.0ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X2
SwissprotQ0DHL40.0FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
TrEMBLA0A2R6QKE60.0A0A2R6QKE6_ACTCH; ATP-dependent zinc metalloprotease
STRINGGorai.002G257200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA225123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-44WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Yu F,Park S,Rodermel SR
    Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.
    Plant Physiol., 2005. 138(4): p. 1957-66
    [PMID:16040665]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]