PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn109311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 429aa MW: 47895.9 Da PI: 7.3042 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.2e-15 | 2 | 42 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +Ed++++ ++ ++G+ W+ I+r+++ gRt+kqc++rw+++l Achn109311 2 QEDDKIIALISKYGPSKWSQISRCLP-GRTGKQCRERWYNHL 42 6*************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 48 | 91 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ + da++ +G++ W+ Ia+ ++ gRt++ +k++w++ Achn109311 48 KDAWTMEEELAIMDAHHIHGNR-WAEIAKILP-GRTDNAIKNHWHS 91 679*******************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.977 | 1 | 42 | IPR017930 | Myb domain |
CDD | cd00167 | 1.66E-13 | 2 | 42 | No hit | No description |
SMART | SM00717 | 2.0E-10 | 2 | 44 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 2 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.2E-16 | 2 | 56 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-29 | 22 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.199 | 43 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-15 | 47 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-11 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 50 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 429 aa Download sequence Send to blast |
MQEDDKIIAL ISKYGPSKWS QISRCLPGRT GKQCRERWYN HLNPDIKKDA WTMEEELAIM 60 DAHHIHGNRW AEIAKILPGR TDNAIKNHWH SSLKKKLDLY LATGNIHPVS KHGIQNGVED 120 ANRTSSSEEL IERSNKGLES TTESSSGTTD SKELESSTPS RDIDASSSVP ANGPVEAEVV 180 KCVPSHRLLY HDQPQLGSCI PLDPTLQNSD SPCVKGYGNL KHCPESVLKN AAKSFTNAPS 240 ILRKRKTEVS ILLSNKVWKT YGKAFEDRFN TSYDQEQTPN NSGLQDGSLC GTACLSSAND 300 GDKCPEPMYK RHGRDGEAFE DRFSTSDQQE ETRNNSGLHK GSLCRTASPS SGNDADKCQQ 360 PLKVYDWRER DEKAFEDTSN ASDELEQTTN NYGFQDGSLR GTTRLRVVSD RDKCRQSRNV 420 YKRRGRDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-40 | 2 | 98 | 13 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077818.1 | 1e-107 | transcription factor MYB3R-5 isoform X1 | ||||
Swissprot | Q6R032 | 2e-63 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A2R6QKE1 | 0.0 | A0A2R6QKE1_ACTCH; Myb-related protein like | ||||
STRING | VIT_08s0007g00360.t01 | 1e-95 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-61 | myb domain protein 3r-3 |
Publications ? help Back to Top | |||
---|---|---|---|
|