PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 661aa    MW: 72708 Da    PI: 8.1777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-111051495399
                 EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++g+++lt+GW+ Fv++++L +gD++vF   + +++ l+v+++r+
  Achn108891 105 ANNGGGHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 149
                 578889*************************..4488999****997 PP
2Auxin_resp99.74e-33220302183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++++  evvY+Prast+eF++k+++v+++++++++ G Rfkm fet+ds+   ++Gtv++v+ +dp+rWpnS+Wr L+
  Achn108891 220 AASLAANGQSIEVVYYPRASTPEFCIKASSVRASMRIQWCTGLRFKMPFETDDSRISWFMGTVASVQGADPIRWPNSPWRILQ 302
                 678999***********************************************998888**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.81E-6106148No hitNo description
Gene3DG3DSA:2.40.330.103.5E-12106151IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-9106149IPR003340B3 DNA binding domain
SuperFamilySSF1019361.07E-9106150IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.15113150IPR003340B3 DNA binding domain
PfamPF065074.6E-28220302IPR010525Auxin response factor
PROSITE profilePS5174517.77546624IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKDVEKSLDS QLWHACAGGM VQMPPVNSKV FYFPQGHAEH ALTTTVDFGD LRRIPALILC  60
RVAAVRFMAD AETDEVYAKI RLVPIRNNEA EKPSSFAKTL TQSDANNGGG HLLTTGWSTF  120
VNQKKLVAGD SIVFLRAENG DLCVGIRRAK KGIAGGSESH SGWNAPSGNC VSPFVAFSAF  180
LREDENKLVR NGSSGNLNSG VGVVGLRGKG RVRPEDVVEA ASLAANGQSI EVVYYPRAST  240
PEFCIKASSV RASMRIQWCT GLRFKMPFET DDSRISWFMG TVASVQGADP IRWPNSPWRI  300
LQGSCHLAFA IVLVLTSSLQ TKLQVAWDEP DLLQNVKRVS PWLVELVSNM PTIHISPFSP  360
PRKKLRLPQH LDFPFDGQFS MPSFSGNPLG PISPLCCLSD NIPTGIQGAR HAQYGLPLSD  420
LHFNDKLQLG LFRSSLQRID PRVKISNGLI PSHGNRNENI SCLLTMGNSN SKLELLLEKT  480
DNVKKPQFIL FGQPILTEQQ ISCSRSSVAV SQFLTGKSSP DGIPEKAEKS VFDHQDFHMT  540
ELCLDTGHCK VFMESEDVGR NLDLSVIESY EELYKRLTNM FGIERSETPC RVLYKDATGA  600
IKQTGDEPFS DFMKTAKRLT IVLDSVGNKF GRKWMTGMRN AENGLDSSNQ TCPLSLSTFA  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-39734518353Auxin response factor 1
4ldw_A2e-39734518353Auxin response factor 1
4ldw_B2e-39734518353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4388763e-94AM438876.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X090426.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070574.10.0auxin response factor 18
RefseqXP_028070575.10.0auxin response factor 18
RefseqXP_028070576.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2R6PEZ50.0A0A2R6PEZ5_ACTCH; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]