PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 300aa    MW: 34601.2 Da    PI: 9.0554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-154087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
       Achn108411 40 KGPWTEHEDVQLVFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 87
                     79********************************************97 PP

2Myb_DNA-binding52.51.1e-1693138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt E+ l ++++ ++G++ W++Iar+++ gRt++++k++w+++l
       Achn108411  93 RGKMTTHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHL 138
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7863587IPR017930Myb domain
SuperFamilySSF466892.68E-2838134IPR009057Homeodomain-like
SMARTSM007172.6E-133989IPR001005SANT/Myb domain
PfamPF002499.8E-144087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-194194IPR009057Homeodomain-like
CDDcd001675.82E-94287No hitNo description
PROSITE profilePS5129425.97588142IPR017930Myb domain
SMARTSM007174.7E-1692140IPR001005SANT/Myb domain
PfamPF002492.6E-1493138IPR001005SANT/Myb domain
CDDcd001671.12E-1095138No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2295141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MHLTCTTKQV ETNPSSKVQA KRRTEEKERG EKMVQEEIRK GPWTEHEDVQ LVFYVNLFGD  60
RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG LKRGKMTTHE ERLVLELHSK WGNRWSRIAR  120
KLPGRTDNEI KNYWRTHLRK KAQERKQAMS PPSSISNSSS SASSNAPVDY MPVAETKERS  180
FYDTGGVLAP SSWISRSSSF SNNPPMDLMP VMETKGRSFY DTGGDLEIFA PKGKKDKEVE  240
ESEKVYSMDD IWKDIDLSEN CKTITSPIWN YCPDLLWMME EEESKMFPAI NDPFFALAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-282714214128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096805.11e-127transcription factor MYB59-like isoform X1
SwissprotQ9LX822e-73MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2R6P7Q01e-162A0A2R6P7Q0_ACTCH; Transcription factor like
STRINGVIT_06s0004g04140.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-70myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]