PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn107771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 139aa MW: 16222.4 Da PI: 8.4311 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.6 | 1e-13 | 2 | 51 | 14 | 57 |
HHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +Lee++ + r+p+a++++++++ l +++ ++V++WFqN++a++++ Achn107771 2 ILEEMYTRggIRTPNASQIQQITAYLslygKIEGKNVFYWFQNHKARDRQ 51 89****97779************************************996 PP | |||||||
2 | Wus_type_Homeobox | 87.6 | 1.3e-28 | 1 | 52 | 14 | 64 |
Wus_type_Homeobox 14 kiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +iLee+y+ G+rtPn+++iq+ita L+ yGkie+kNVfyWFQN+kaR+rqk Achn107771 1 MILEEMYTrGGIRTPNASQIQQITAYLSLYGKIEGKNVFYWFQNHKARDRQK 52 69*****9789****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.442 | 1 | 52 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-11 | 2 | 51 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 2 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.53E-7 | 2 | 52 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MILEEMYTRG GIRTPNASQI QQITAYLSLY GKIEGKNVFY WFQNHKARDR QKLRKLLNHH 60 HHLLSYPDSR PPPVLPQVSH YSSVGFLPQD GVLEDASTQT MSYTWTVDHH LTERTKELYD 120 NFSDHCPPVL KLFIYQYS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB938213 | 5e-40 | AB938213.1 Sarracenia purpurea PRS mRNA for pressed flower, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077295.1 | 9e-39 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A2R6PF42 | 7e-78 | A0A2R6PF42_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | EOY34224 | 1e-35 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-29 | WOX family protein |