PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn106991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 654aa MW: 73704.9 Da PI: 4.8385 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101 | 1.6e-31 | 289 | 428 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+P+d+e++++ L+k ++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r++ + +W++t Achn106991 289 LPRGVKFDPSDQEIMWHLLAKV-GVRNmkphpfIDEFILtVDEDdGICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIYsddfcDVRWHKT 385 699************7766654.44443465553333333444435**********.677888899******************74334455889**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l Achn106991 386 GRTKPVIL-DGVQTGCKKIMVLYvsLVRGGKAEKTNWVMHQYHL 428 ********.99************6545888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-36 | 279 | 447 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.985 | 289 | 447 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-13 | 290 | 428 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MKNNSWLAGA VMGHDQKLEL CQLRCPAGVS ERLSGVIRNH ASYGLNLRDR VNGLQLPQLT 60 ESKHKSSHAI KGAPLESLYA SFCLHSLWFG NCNIHECLDS VLLVDSSIQV LYFIQAWRND 120 GRDGAIKDDP FLKAPLQQIL IKRNINEEGL GGVVQCFFLE VDDDGCLQML TLQVSHDQME 180 QVAKNIQELN GCFKGLEFLR DEGKEKELKR LQSSVNYKKE KCEGGEEERL KELIFETNSE 240 AQDVVTSADL RPSDCIRSGS VGVVDLMFLK SYQNMQVPFT QVCHEWPGLP RGVKFDPSDQ 300 EIMWHLLAKV GVRNMKPHPF IDEFILTVDE DDGICYTHPQ NLPGVKQDGS VSHFFHRAIK 360 AYNTGTRKRR KIYSDDFCDV RWHKTGRTKP VILDGVQTGC KKIMVLYVSL VRGGKAEKTN 420 WVMHQYHLGT GEDEKEGEYV ISKVFYQQQE GKQTDKFEQD LPDGTDVMIA KVDPVTPPSV 480 TPDPPRTEKR LSCTDPNALL QYHEIGHVED EVEAAFGEPN HQDSLMVENH TDLGADNNNN 540 QTGEEPKWWD SESQNLLDSQ QLVEGLSLCD ELLRSQSPGR DGNENGELER KPCLSDYAHL 600 GPEYLKKDLE TCQDLVLDPA NIELDTPPDF RLSQLEFGSQ DSFLAWGGSK PVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028087921.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-150 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2R6QQM2 | 0.0 | A0A2R6QQM2_ACTCH; NAC domain-containing protein (Fragment) | ||||
STRING | EOY02145 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-148 | NAC family protein |