PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn106671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 314aa    MW: 35026.4 Da    PI: 6.1805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn106671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14129175354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Achn106671 129 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 175
                 79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-12129175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-15130184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15130185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-5139178No hitNo description
Gene3DG3DSA:3.30.70.2609.7E-5212272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNGFEVKFLY LNGDWMQQQQ QQQQQQQQQN MVSLSPILPW SHSFNPVHFA ANPAREPDPF  60
FLPPPTPSPY GGLFNRRAPS LQFAYDGLSI SDAFGQGVQP GAAPFGLQAE LGKMTAQEIM  120
DAKALAASKS HSEAERRRRE RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS  180
LIAETSSVPT ESDELTVDVS DDENGKFVIR ASLCCEDRAD LLPDLIKTLK ALRLKALKAE  240
ITTLGGRVRN VLFITGEEEE DEEQHQQQQQ QYCISSIQEA LKAVMEKTNG DESSSGNVKR  300
QRTNMNVLEH RSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090777.11e-155transcription factor bHLH30-like
SwissprotQ9S7Y11e-103BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2R6QQL90.0A0A2R6QQL9_ACTCH; Transcription factor bHLH30 like
STRINGGorai.008G186700.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]