PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 166aa    MW: 18192.4 Da    PI: 4.7618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-182777155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Achn104551 27 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAARAYDVAAYCLKG 77
                68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-122777IPR001471AP2/ERF domain
SMARTSM003807.6E-362891IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222887IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-322886IPR001471AP2/ERF domain
PROSITE profilePS5103223.8682885IPR001471AP2/ERF domain
CDDcd000183.30E-312986No hitNo description
PRINTSPR003678.7E-132940IPR001471AP2/ERF domain
PRINTSPR003678.7E-136787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEEPPPPCTE DDLTTASDTA SAGTRHPVYR GVRKRRWGKW VSEIREPRKK SRIWLGSFPA  60
PEMAARAYDV AAYCLKGRKA QLNFPDEVEL LPRPSTCAAR DIQAAAAMAA KAGVAEKKES  120
DGGVDDFWGE IELPELNTVS DYLSEVWCWN SCGVTVSSDA TWIDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-192390977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835591.13e-73PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-54ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2R6R7L51e-117A0A2R6R7L5_ACTCH; Ethylene-responsive transcription factor
STRINGMigut.N01538.1.p1e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]