PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn103011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 145aa    MW: 15528.8 Da    PI: 10.3114
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn103011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-193266135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Achn103011 32 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 66
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.66E-132665No hitNo description
SMARTSM004018.5E-142681IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-153166IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.66E-133166No hitNo description
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003203.6E-173266IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2683262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVDLSDKGSE LEDMNGKTSD GASSEGSHVK TCADCGTTKT PLWRGGPAGP KSLCNACGIR  60
SRKKRRALLG LNKASTEDKK PKRNSDQNIS VRKSGKNGKL GEESMKRQLL MLQRSTVEKL  120
RKKLGEEEQA AVLLMSLSCG SVYG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649545.12e-59PREDICTED: GATA transcription factor 16
SwissprotQ9FJ109e-38GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2R6PJL91e-97A0A2R6PJL9_ACTCH; GATA transcription factor
STRINGVIT_05s0077g01450.t019e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-40GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]