PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn102731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36879.8 Da PI: 4.9082 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.6 | 1.7e-19 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ lv++++++G g+W++ ar+ g++Rt+k+c++rw++yl Achn102731 66 RGPWTVEEDLTLVNYIEKHGDGRWNSLARCAGLKRTGKSCRLRWLNYL 113 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 119 | 162 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ q+G++ W++I+++++ gRt++++k++w++ Achn102731 119 RGNITLEEQLLILELHSQWGNR-WSKISQHLP-GRTDNEIKNYWRT 162 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.186 | 61 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-31 | 63 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-16 | 65 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-17 | 66 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 67 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.59E-12 | 68 | 113 | No hit | No description |
PROSITE profile | PS51294 | 18.526 | 118 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 118 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 119 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 121 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MFASASLVAE EDGDKDFPFR SDSELRSDKY KFVESNKEPP IGKMEVEGRV CDPMSEEERT 60 MMDLRRGPWT VEEDLTLVNY IEKHGDGRWN SLARCAGLKR TGKSCRLRWL NYLRPDVRRG 120 NITLEEQLLI LELHSQWGNR WSKISQHLPG RTDNEIKNYW RTRVQKHAKH LKCDVNSKQF 180 KDTMRYLWMP RLVERIQAHA VAANATDTQT APPLAAVDNL SAAASSSDSF AAQVSPSSDI 240 TDYYNYPVNN NNNAAVISQN QDYDQVNQVF NPDSLTGQWF EAGDFNYGLD FNSQWFEAGD 300 TSDNLWNSDD IWFLQQQFNL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 63 | 166 | 4 | 106 | B-MYB |
1h8a_C | 1e-24 | 63 | 166 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115735.1 | 1e-134 | transcription factor MYB108-like | ||||
TrEMBL | A0A2R6PJI5 | 1e-170 | A0A2R6PJI5_ACTCH; Transcription factor like | ||||
STRING | POPTR_0010s15970.1 | 1e-118 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-83 | myb domain protein 78 |