PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn102591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 1050aa MW: 115948 Da PI: 7.2728

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn102591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.8	8.3e-40	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvC++hska+ ++v +l+qrfCqqCsrfh l+efDe++rsCrrrLa+hn+rrrk+++ Achn102591 153 VCQVEDCRADLTNAKDYHRRHKVCDIHSKASRAVVGNLMQRFCQQCSRFHVLQEFDEGRRSCRRRLAGHNRRRRKTHP 230 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-31	148	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.103	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-37	152	233	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-28	154	227	IPR004333	Transcription factor, SBP-box
SMART	SM00248	450	813	843	IPR002110	Ankyrin repeat
SuperFamily	SSF48403	5.47E-6	815	931	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-5	817	930	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.42E-5	818	929	No hit	No description
SMART	SM00248	1.5	870	900	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence Send to blast
MEAKFGGKAH QFYGPVIPGV KAVGKTSAEW DLNDWKWDGD LFTAAPLNSI PLDCRSRQLF 60 PVGSEFPTDT LVSNSWSSCS DEVDLGNEKG KRELEKRRRA VVIEDEELND EAGSLKLKLG 120 GQVYPITESE MEKWEGKSGK KSKVVAATSN RAVCQVEDCR ADLTNAKDYH RRHKVCDIHS 180 KASRAVVGNL MQRFCQQCSR FHVLQEFDEG RRSCRRRLAG HNRRRRKTHP ENVANGGSLN 240 DENGSGYLLV SLLRILSNMH SSAGYGNAAN TSDQTKDQDL LTHLLRNLAS LAGSTNGRNT 300 DALLPGSQGL HAGGTSHITP EQVSDLISNR PKCTSILGST SKMDDCFNIQ DSLKPNGECV 360 TVPAFEGTGK RTFTDSTQGG PLQTPSPIPC PTRDSIPSKA SVPENGVGRM KLSDIDLNHA 420 YDDSQNCGET LESYHGPVNL GIGSLDCTFL RNREFQKSCP PQTSGNSGST STQSPSSSSG 480 EAQSRTDRIV FKLFGKDPSH FPLVLRKQIL DWLSHSPTDI ESYIRPGCII LTIYLRLGKS 540 TWEELYCDLS SSLTKLLDAS NDSFWSTGWV YTRLQHRVAF IYNGQAVLDM LLPPKSHKNC 600 RILSIKPIAV PLSEKAQFLV KGFNLSWSTT RLLCALEGKY LLQESCSDMI GGGDILVDHD 660 ESIEIQSRSF SCSIPSVTGR GFIEVEDHSL SSSFFPFIVT DKDVCSEICT LENELELAEI 720 ADNIHPESEM IKARNNALEF IHEIGWLLHR SQLKFRLGHM DPNLDLFPFK RFKWLMEFSI 780 EHDWCAVVKK LLGIVFDGTV DAGEHSSTEL ALLEMGILHS AVRRNCRSMV EMLLRYIPDG 840 ITDKSGSEKQ QQHVNQGSNF LFRPDAIGPG GLTPLHIAVS SDGSESVLDA LTDDPGSVGI 900 EAWKGARDSA GLAPHDYACL RGYYSYIHLV QKKTSKKSGS GHVVLDIPGS LLQCNIKQKL 960 MDGHNSAKVA SFRTEKNEMK PFQGHCKLCL QKRTYGSART SVALYRPAML SMVAIAAVCV 1020 CAALLFKSSP EVLYVFRPFR WELLKYGSS*

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence Send to blast

MEAKFGGKAH QFYGPVIPGV KAVGKTSAEW DLNDWKWDGD LFTAAPLNSI PLDCRSRQLF  60
PVGSEFPTDT LVSNSWSSCS DEVDLGNEKG KRELEKRRRA VVIEDEELND EAGSLKLKLG  120
GQVYPITESE MEKWEGKSGK KSKVVAATSN RAVCQVEDCR ADLTNAKDYH RRHKVCDIHS  180
KASRAVVGNL MQRFCQQCSR FHVLQEFDEG RRSCRRRLAG HNRRRRKTHP ENVANGGSLN  240
DENGSGYLLV SLLRILSNMH SSAGYGNAAN TSDQTKDQDL LTHLLRNLAS LAGSTNGRNT  300
DALLPGSQGL HAGGTSHITP EQVSDLISNR PKCTSILGST SKMDDCFNIQ DSLKPNGECV  360
TVPAFEGTGK RTFTDSTQGG PLQTPSPIPC PTRDSIPSKA SVPENGVGRM KLSDIDLNHA  420
YDDSQNCGET LESYHGPVNL GIGSLDCTFL RNREFQKSCP PQTSGNSGST STQSPSSSSG  480
EAQSRTDRIV FKLFGKDPSH FPLVLRKQIL DWLSHSPTDI ESYIRPGCII LTIYLRLGKS  540
TWEELYCDLS SSLTKLLDAS NDSFWSTGWV YTRLQHRVAF IYNGQAVLDM LLPPKSHKNC  600
RILSIKPIAV PLSEKAQFLV KGFNLSWSTT RLLCALEGKY LLQESCSDMI GGGDILVDHD  660
ESIEIQSRSF SCSIPSVTGR GFIEVEDHSL SSSFFPFIVT DKDVCSEICT LENELELAEI  720
ADNIHPESEM IKARNNALEF IHEIGWLLHR SQLKFRLGHM DPNLDLFPFK RFKWLMEFSI  780
EHDWCAVVKK LLGIVFDGTV DAGEHSSTEL ALLEMGILHS AVRRNCRSMV EMLLRYIPDG  840
ITDKSGSEKQ QQHVNQGSNF LFRPDAIGPG GLTPLHIAVS SDGSESVLDA LTDDPGSVGI  900
EAWKGARDSA GLAPHDYACL RGYYSYIHLV QKKTSKKSGS GHVVLDIPGS LLQCNIKQKL  960
MDGHNSAKVA SFRTEKNEMK PFQGHCKLCL QKRTYGSART SVALYRPAML SMVAIAAVCV  1020
CAALLFKSSP EVLYVFRPFR WELLKYGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	153	227	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028067996.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12
TrEMBL	A0A2R6PK56	0.0	A0A2R6PK56_ACTCH; Squamosa promoter-binding-like protein
STRING	EMJ26594	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1