PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn100001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 135aa    MW: 15562.9 Da    PI: 10.267
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn100001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.28.9e-1111891485
                T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE.EEEE- CS
          B3 14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv.vFkld 85
                + l++p + ae+h        gg ke   +l + d + ++W +k+++  + ++y++++ W+e+ +a++L+++D++ +Fk++
  Achn100001 11 KTLRIPTQDAEKHfpplkqpkGGYKE--EKLLVSDAQKQRWWMKIKFYLYEEAYMIAGDWSEYGSAHKLQARDVIrIFKVV 89
                4589***********99888744433..4799*****************************************98456655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-11687IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-12685IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKHVATHADV KTLRIPTQDA EKHFPPLKQP KGGYKEEKLL VSDAQKQRWW MKIKFYLYEE  60
AYMIAGDWSE YGSAHKLQAR DVIRIFKVVK NVPNDKHRFF DYARSGKLGL VRLHHLEQER  120
IAVAVGGRST TTEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-06B3 family protein