PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn099771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28559.8 Da PI: 5.1963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eI++p++ + r++lg+f t+e+Aa+a++ a+ ++g Achn099771 88 IYQGIRKRS-WGKWVSEIWEPRK---KSRIWLGTFATPEMAARAHDVAAITIKG 137 69****888.**********843...6**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.73E-32 | 87 | 147 | No hit | No description |
Pfam | PF00847 | 1.8E-11 | 87 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-20 | 88 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-35 | 88 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 88 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 88 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAIEEDIDGG TIERERERES IYKSSPPPKS IIHTVSNYDP PIMGLVVDLE CEEQTASSTS 60 STMATAAAAT VSITLKKVQK SDSEKHPIYQ GIRKRSWGKW VSEIWEPRKK SRIWLGTFAT 120 PEMAARAHDV AAITIKGQSA HLNFPDLAHE LPRPASKSPK DIQAAAALAA TLATSRSHEA 180 EAESSQAEST SSQSLDSSTR DSSTSHIIKA DDPFFDLPDL FLNLEHRTND LHYMLTSHLA 240 RDEPFGGEFW PEDLFLWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 86 | 145 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077791.1 | 1e-77 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 5e-43 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q9ZQP3 | 3e-44 | ERF38_ARATH; Ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A2R6Q813 | 1e-151 | A0A2R6Q813_ACTCH; Ethylene-responsive transcription factor TINY like | ||||
STRING | EOY24281 | 4e-59 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 7e-42 | ERF family protein |
Publications ? help Back to Top | |||
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