PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn099771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 259aa    MW: 28559.8 Da    PI: 5.1963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn099771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1788137255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r ++ +g+Wv+eI++p++   + r++lg+f t+e+Aa+a++ a+  ++g
  Achn099771  88 IYQGIRKRS-WGKWVSEIWEPRK---KSRIWLGTFATPEMAARAHDVAAITIKG 137
                 69****888.**********843...6**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-3287147No hitNo description
PfamPF008471.8E-1187137IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2088146IPR016177DNA-binding domain
SMARTSM003801.2E-3588151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3088146IPR001471AP2/ERF domain
PROSITE profilePS5103222.08988145IPR001471AP2/ERF domain
PRINTSPR003671.4E-989100IPR001471AP2/ERF domain
PRINTSPR003671.4E-9111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAIEEDIDGG TIERERERES IYKSSPPPKS IIHTVSNYDP PIMGLVVDLE CEEQTASSTS  60
STMATAAAAT VSITLKKVQK SDSEKHPIYQ GIRKRSWGKW VSEIWEPRKK SRIWLGTFAT  120
PEMAARAHDV AAITIKGQSA HLNFPDLAHE LPRPASKSPK DIQAAAALAA TLATSRSHEA  180
EAESSQAEST SSQSLDSSTR DSSTSHIIKA DDPFFDLPDL FLNLEHRTND LHYMLTSHLA  240
RDEPFGGEFW PEDLFLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-16861451272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077791.11e-77ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP33e-44ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2R6Q8131e-151A0A2R6Q813_ACTCH; Ethylene-responsive transcription factor TINY like
STRINGEOY242814e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]